RNA id: TU140840


Basic Information

Item Value
RNA id TU140840
length 361
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G124035
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 4767230 ~ 4767832 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGGGAGGGTCAACATCAACAGCCTAAATCTAAGAGAGAGCGACAGTGAGGCGGAGGGTTTTTGCAGCGTTTACCTGAGAAAGCAAGCTGCAAGTGAGGAGGTAGAGCAACCTGAGACCCTGGCTGCAGACTCTTAAACAGATCTGGGGGACAGTCTGGGCCAGGGTGTATCCTGAGTTGGTAGCGGGTGAAGCCCCCATGTTGCTGCAGCCAGGAACTCCAGGGCCTGTGGGGTTGAAGTTGAGGAGAGATGGGAACTGGAAGGGTAAAGAAACAGGCACTAGACCCCCGAGCATCCCAAAACCCAGGGGGAGGGAGGGGGGCACCGAGCCCAAGAGGTTACTTCCTGAAGATGAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140837 lncRNA downstream 2228 4764718 ~ 4765002 (-) True G124032
TU140509 lncRNA downstream 27631 4737303 ~ 4739599 (-) False G123737
TU140507 lncRNA downstream 27631 4738029 ~ 4739599 (-) True G123737
TU140558 lncRNA downstream 50201 4715864 ~ 4717029 (-) True G123783
TU140560 lncRNA downstream 54713 4711861 ~ 4712517 (-) True G123785
TU140845 lncRNA upstream 82845 4850677 ~ 4851335 (-) True G124040
TU140532 lncRNA upstream 128712 4896544 ~ 4898680 (-) True G123757
TU140847 lncRNA upstream 138723 4906555 ~ 4906840 (-) True G124042
TU140849 lncRNA upstream 142898 4910730 ~ 4910943 (-) True G124044
TU140523 lncRNA upstream 146508 4914340 ~ 4919052 (-) True G123748
CI01000024_04596928_04606949.mRNA mRNA downstream 160281 4596755 ~ 4606949 (-) True CI01000024_04596928_04606949
CI01000024_04584906_04590559.mRNA mRNA downstream 176509 4584454 ~ 4590721 (-) True CI01000024_04584906_04590559
CI01000024_04565630_04567525.mRNA mRNA downstream 199596 4565222 ~ 4567634 (-) True CI01000024_04565630_04567525
CI01000024_04555804_04556790.mRNA mRNA downstream 210082 4555514 ~ 4557148 (-) True CI01000024_04555804_04556790
CI01000024_04542156_04543940.mRNA mRNA downstream 223259 4540433 ~ 4543971 (-) True CI01000024_04542156_04543940
CI01000024_04775678_04783105.mRNA mRNA upstream 7151 4774983 ~ 4783105 (-) True CI01000024_04775678_04783105
CI01000024_04849096_04855992.mRNA mRNA upstream 80993 4848825 ~ 4856309 (-) True CI01000024_04849096_04855992
CI01000024_04860251_04882047.mRNA mRNA upstream 92270 4860102 ~ 4882804 (-) True CI01000024_04860251_04882047
CI01000024_04890922_04892119.mRNA mRNA upstream 122944 4890776 ~ 4892154 (-) True CI01000024_04890922_04892119
CI01000024_04900693_04903891.mRNA mRNA upstream 132018 4899850 ~ 4903966 (-) True CI01000024_04900693_04903891
TU140468 other downstream 825306 3936042 ~ 3937057 (-) True G123701
TU139935 other downstream 2212194 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 3940379 823733 ~ 826851 (-) True G121380
TU142441 other upstream 2589405 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 2589873 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 2589922 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 3207835 7975667 ~ 7976047 (-) False G125798

Expression Profile