CI01000024_04542156_04543940 (NFIL3-5)


Basic Information

Item Value
gene id CI01000024_04542156_04543940
gene name NFIL3-5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 4540433 ~ 4543971 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_04542156_04543940.mRNA
AGTTATACAAACTGGCCTCAATAGGACCACAATGGAAAGCTTAAATCTTCCTACCCAAAACAACAGTGCCAGCTTGGACACATTAGAAACGTTCTCAAACTACAGCGAGAGTTTACCATCACCTCAAATCGCCAGCCCTCCTCGTCAAGGTCGACTAATAAAACCAAAACCCAACACCACCTGTCGACGGAAGCGGGAGTTCATCTCGGATGAGAAAAAAGATGCATCCTACTGGGAAAAACGACGCAAGAATAACGAGGCTGCAAAGAGGTCAAGGGAGAAACGGCGGCTCAACGATATGGTGCTGGAGAACAGGGTAATAGCACTGAATGAGGAAAACGTGCGGCTGAAGACAGAGCTCCTGCAATTGAAATTGAGATTTGGACTCATAAGCTCTGCCTCTTACATGGAAAAGACCCAGCAGATCAGCAGTGGTTCAGAGGCAGCGACTAATGGAGCTAATGGTACAGGAGCGACTTCTGGAAATCCATATTACTCAAGCAGTGGATACTCTAGTGCTTCTCAGGTCATGATGAACTCTGATTCCTCAGAGGCTGAGCAGCCGACCAGGAGCGAACGCCACACAACGTTACCCAAGTACTCCCCCCGTGGATCACTCTCTGACATGTCTGATGGATCTTCACGGGACAGTCCTGAACCTATAAACTTTGACATCAAACATGAGAGCTCTGGAATGGACATTAACAGGCTTGAGGCAAGTGTTCTTAATGGCATGTTCAATAGCCATCAAAGTCTCGGACGACTGGAGACTCACCAACCTCAAGAAATGGAGCAAGAAGGCGTCAACAACCCAGCCCCTCCATCTGCCACGCCCCAAAGAAGTGTCATCCTCTTTCGTTCTGGTAGCAGCTCCTACCCTGTTGAGAGCCAAAGGGTTGAGGACATGGAGCAGCAGGTGGCATCCCAAACACAACAGAATGGGCAAATCACTCATTTTACAGGGTGCAGTCTACCAATAAGACCTGATGGTCTAGAGACTCTTTCAGAGGTGGCACAGCAGCTGGCCAGGAGGTCTTTGGATTCACCAAACTATGAATTCACTAACGGCAAGGCAGATGCCGGGGAGAGCAGACGGTTTGTCATACAGCAACAAGACCTGAGTTTTCAAGGACAATGCAGAAGTCAGGTTCAAGACAGCACCCCAAATTCTTTTGCCCCAGATTTGCTCAATGAGGCCAGAAAAGCCCTTGTATGCCAGGGGTCCAATCCCTACCTCGGCACTCTGAACGAGGAGCCACCAGAGCTAACGTATGAAGGTTGCCCGAGAGCAGATGGCTACTACCAAGAGCACTCCTCCTCAGGCAAGGACAGCTCCTCTAGCGACGGAGACCCACGGAGCTCAGATAAAGAAGCCTCCACTGACGATGAATCTCCCTCATCCTCTTCCTCTGATACTGGTGGATTTCACGCCGTCCACCAGTCAGCATCCTCACCCACCATGGTCATCAGTGATTCTTACCAGTATGGAGACAACCAAGGTGAAATGAAAGGCACTGCTCTGCCACACAAGCTAAGGCTTAAGTATAGAGCACTATCCAATGGTGGCTCCCAAGACGTTCCGGCTACAACAGCTGCTACGTCACCTGATTCCGCTCTGCCTCAGCACCCCTACCTGGCACTAGCACAGGTTAACCAGCAGCAAGGCAGCAGCTGTGGAACCAAGGAAGGGGAGAGTGACACAGCAGATGAACTTTGCACACAACAGTTTCCTTCCAGAGAGAAGGAAGAGGGATGGAAGGAAAGCGGGAAGAGGAGCTCAGGAGGACGAGGTAGCAGAAACAAGAAACGTGACTGAAACTGGCACATCACATCCTTTAATAGAGTTAAAACAGGACTTGATAAATGTCATCTTTACCATCCTATAGAAAGAAAAAGGAAAATGGTACCAATTAATTGCATGAAAGTCTATTGCTTATACATAACAACAACAAGAAAGTAACTCATGTTCTTGGTCCGTTTTCTTATCAAGAGCAATTCTGTGACTTTTAATGCAGCTCTGTTCTCTCACTCTCTTTCAGAAGCACTTAACTATAACTTTAAAAAGTTACAAAGAGGAAATTGAGCTCTTTTTAATGATCTTTTTCCTCTTTCAAAACAAACCTACAAAACTCTGTATAGCAACCTTTGACTCCACCTTTGAATATTTACATATCTCTGCCATGTTTCGTAGCTTAGCTAATTTGATGGGTAGTTCCTGAACCCAAGTAGTTTTCGCCACAATTCACGGAGTTGAAGACACAAGTCCTTTTCTCCCTACTGATTTCAGAAGGAAAAACCTCAACAGATTTATGCCTGTCTCTCTCCTCCTCTGCCTTTGGACTTAAGCATTATTGAAGCACTTGGATTATTATAATACTGTGACATGACTAAACATATCATATTTCAGTATATTTTATGAAAAATGTCAACATGTCAATCTTTAAGAGTAGAAAAGTGGGAGAAAGACTACGAACACTGTCTACTTCTTACTGTTTGAATTCCTGTATAGTCTATTCCTAATGTTCATGTCTGATGCTTCCATTATATTTTCTAAGTCCATCGTATTTATGTCACTGTATCATTTGAGAGATACCAGAATGTTCTCTTCATAGTGTTTTGGTCATTCATAGGTCAACGTTAACCAGTGAAAATCACCTTTTGTCCAGTACATTGCTATACTGTATCAATGTAAAGGAGCCTGATGGATCGACCCTCTCCAAAGGTCACTGTGACCAGTCCTTTTTTTAAAAGTTGCAATCTACCTGACATTTGGCCAAATTAGAGTAAAAGCCCTTTCAGAAATGTCAAGGTGGTCTCTTCCAAGGCAGAGTTAATATGCGGACTGTACAAAGTGTAAAATATATCATTGCCATCTCAAGATGGTCGTGTCCTCTGTGATCAGGTTTCAGAGACGCCTCACATGCTACCTCATGAGAAGAAACGGTTGAGGAGTTTCTCCTTTGGTGCGTGTAGCCCATTGCATCATCATACCCATTAAATGTTGCATATAAAAGTTAACAAAGTAAAATGCTGCAGCACACAACTAAGTGTTACCTAGACACAAATCCAGTCCCACTAGTTGTCTTTGTAGAATTTACCACAGCTGAAAGCTGCTTCTGCACTGAATTTTTTTCATCAGATTTTATACAATCTGTGTTTATTGTTCCCAAACAGGTGCCTGGCACTGGCCATTATGTAAAAAGTGTACAGACAAATTCTCTTTTGAGTATTTTAAGTTTGTATCAAGTTTATTTTGGCATTCTATAATAATAATTATTAATATTGTATTTTTATTTTATTTTATATTCCAATGCTATTATTCTTTTTGGGTTGATATTTCTTGTGTCTGTTGTCTGTTCACCTCAATGTGATACAGTATGTATTTTCATGTCCTGTTCATCTATTTCACCTCTGTACCCTGGTGTATTGTGTGGTATTTACTGAAGTTTTATGAGAAAAAAAAAAAAGTTTGTTAAAAGAGGCTGGCGTAATTGTCAAGGTGCTCAGAAGGACACTAAAGGAGTGGAAAGAAAAATAAA

Function

symbol description
nfil3-5 Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within circadian regulation of gene expression and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in epiphysis.

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_04542156_04543940.mRNA True 3539 mRNA 0.43 1 4540433 4543971

Neighbor

gene id symbol gene type direction distance location
CI01000024_04457561_04464979 GCDHA coding downstream 75454 4457077 ~ 4464979 (-)
CI01000024_04453773_04455276 NA coding downstream 85157 4453706 ~ 4455276 (-)
CI01000024_04315852_04316615 NA coding downstream 223756 4315654 ~ 4316677 (-)
CI01000024_04306066_04310552 UBE2G2 coding downstream 229881 4305644 ~ 4310552 (-)
CI01000024_04280957_04294789 TSPEARA coding downstream 245644 4280434 ~ 4294789 (-)
CI01000024_04555804_04556790 NA coding upstream 11543 4555514 ~ 4557148 (-)
CI01000024_04565630_04567525 KLF2 coding upstream 21251 4565222 ~ 4567634 (-)
CI01000024_04584906_04590559 NA coding upstream 40483 4584454 ~ 4590721 (-)
CI01000024_04596928_04606949 NA coding upstream 52784 4596755 ~ 4606949 (-)
CI01000024_04775678_04783105 NA coding upstream 231012 4774983 ~ 4783105 (-)
G123940 NA non-coding downstream 39255 4500654 ~ 4501178 (-)
G123937 NA non-coding downstream 91329 4447190 ~ 4449104 (-)
G123936 NA non-coding downstream 93730 4446403 ~ 4446703 (-)
G123929 NA non-coding downstream 132537 4407294 ~ 4407896 (-)
G123751 NA non-coding downstream 208725 4326871 ~ 4331708 (-)
G123770 NA non-coding upstream 34223 4578194 ~ 4578523 (-)
G123788 NA non-coding upstream 34665 4578636 ~ 4579617 (-)
G123996 NA non-coding upstream 118404 4662375 ~ 4662574 (-)
G123998 NA non-coding upstream 120207 4664178 ~ 4664387 (-)
G123999 NA non-coding upstream 120570 4664541 ~ 4665029 (-)
CI01000024_03938368_03941795 NA other downstream 598509 3938315 ~ 3941924 (-)
G123233 NA other downstream 1985397 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 3713582 824968 ~ 838550 (-)
G125457 NA other upstream 2813266 7357237 ~ 7358104 (-)
G125798 NA other upstream 3431696 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location