G123937


Basic Information

Item Value
gene id G123937
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 4447190 ~ 4449104 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU140728
GATTCAATAGTGCATCTTCAATCCATCTTGAGCACTTTTCTAATTTATAGCATACTTCTAAAATAAACTGGGTCAAAAGCCCAAAGTCACATTAAAACTGTATAAGAAATTCAAACATAGTCATCCTCTCCGGAAACATCGTCGCGCCTTTTAAGAACAGCCCTGTAAAGAGAGGTTCCTCTAGCCTGGATAAAAGTAACAGTCAGCTGTTTCTTGTTGACCTCCACGTGGGCAAAGCCACCTAAGGTGCCAGCATCACCGTTGAAGAACTTCAGGTAGCCTCGAGGAACCTGGTTGCGATGCCGAACGTCAGGATCCATGAAGTTACCAGCTCCACTAACTACATAACCGATTCCAGACTCCTTGATGTATTGTAGATTGTGATCATGGCCACACAGGTAAGCAGTGGCCTTGTACTTCTTAAGCAGTGGTCTCAAGCTCTTCAGCAGACAGTCAGTTGGCCCATGCTCTGATATGGACCACACTGGATAATGGCCAGCCACCAGGAGATAGTCAGCCTTAGACTTTGCCAAGCGTTCCTGAAGCCACAGCAGTTGTCTATTGGCCTGAACACCACTTCGGGGAGCTCGGGGCTGCTGGTCAAGGAAGTCATCAGAATTGCCACACAGCAACACCGTGTCCAACATGAGAATGGTCAAAGTGCTGTCCGTTCGAGGAATGCGGAAGTTCATCTCATAATAGTAGTAGGGGAAGTTCCATCTCTTTGACTTTTGGCTGTACTCAATTTGAGCAAGGACGTTTCCCGCATGGTCGTGATTGCCAGCAATGACGTACCATGGAATATTGAGAGAATCCTGAGTGTAGACGTCTTCAAACGTGACCTGGAATCTAGGGTCATTGACGTCACTGACACCCTTATAGTAGAAGTTGTCACCAAGCGCTAAAATGAAGTCTGCGCCCATCTGGGAAGCGGTTTTGGCCATCATGCGGGCAGTTGCCTTTTCTATGGGGGTAACATAGGGAGGATATGGCAGTCCACCCCAGTCTCCCAAAACCAGGAACCTGATGGAGGACTTGTTACTTCCTTTAGCTTCCAGATCAATGAATGAGGAGTGGTAGCAGAGGACCCCAGGGAGAGCAGTTAAAAACACCAGCATTAGTGGTGACGCCATACCAGCAGCTTTTGCTCTTTGAGAGTCCTCTCTCTACACCTCACATCCATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU140728 True 1184 lncRNA 0.48 6 4447190 4449104

Neighbor

gene id symbol gene type direction distance location
CI01000024_04315852_04316615 NA coding downstream 130513 4315654 ~ 4316677 (-)
CI01000024_04306066_04310552 UBE2G2 coding downstream 136638 4305644 ~ 4310552 (-)
CI01000024_04280957_04294789 TSPEARA coding downstream 152401 4280434 ~ 4294789 (-)
CI01000024_04262881_04279056 USP40 coding downstream 167973 4262553 ~ 4279217 (-)
CI01000024_04244945_04245709 NA coding downstream 201423 4244288 ~ 4245767 (-)
CI01000024_04453773_04455276 NA coding upstream 4602 4453706 ~ 4455276 (-)
CI01000024_04457561_04464979 GCDHA coding upstream 7973 4457077 ~ 4464979 (-)
CI01000024_04542156_04543940 NFIL3-5 coding upstream 91329 4540433 ~ 4543971 (-)
CI01000024_04555804_04556790 NA coding upstream 106410 4555514 ~ 4557148 (-)
CI01000024_04565630_04567525 KLF2 coding upstream 116118 4565222 ~ 4567634 (-)
G123936 NA non-coding downstream 487 4446403 ~ 4446703 (-)
G123929 NA non-coding downstream 39294 4407294 ~ 4407896 (-)
G123751 NA non-coding downstream 115482 4326871 ~ 4331708 (-)
G123919 NA non-coding downstream 123836 4323124 ~ 4323354 (-)
G123918 NA non-coding downstream 124069 4322842 ~ 4323121 (-)
G123940 NA non-coding upstream 51550 4500654 ~ 4501178 (-)
G123946 NA non-coding upstream 61972 4511076 ~ 4575960 (-)
G123770 NA non-coding upstream 129090 4578194 ~ 4578523 (-)
G123788 NA non-coding upstream 129532 4578636 ~ 4579617 (-)
G123996 NA non-coding upstream 213271 4662375 ~ 4662574 (-)
CI01000024_03938368_03941795 NA other downstream 505266 3938315 ~ 3941924 (-)
G123233 NA other downstream 1892154 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 3620339 824968 ~ 838550 (-)
G125457 NA other upstream 2908133 7357237 ~ 7358104 (-)
G125798 NA other upstream 3526563 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location