CI01000024_04457561_04464979 (GCDHA)


Basic Information

Item Value
gene id CI01000024_04457561_04464979
gene name GCDHA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 4457077 ~ 4464979 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_04457561_04464979.mRNA
GTCTGAATACACCATGGCATTAAGAACAGCTTTATCACGCCTGTGGTTGAACTCACAGCGATGTTCTCTGATCTCTGTGTCAAGGACCCAGGGCACTTCAGCAACTGCTGCACACGCTAAGGTGCATTTTAACTGGCGAGATGCTTTGGATCTGGACGGGCAGCTCACAGAGGAGGAGATCATGATCCGAGACAGTTTCCGCACATACTGCCAGGAGAAGCTCATGCCCCGCATCCTCATGGCCAACAGGAATGAACATTTCCATCGGGAGATTGTAAACGAGATGGGAGAACTTGGTGTCCTTGGGCCTACGATTCAAGGATATGGTTGTGCGGGCACCAGTTACGTGGCATATGGTCTGATTGCCAGAGAGGTGGAGAGAGTGGACAGTGGGTACCGTTCAGTTATGAGTGTCCAGTCTTCACTGGTCATGCACCCTATCAATGCCTATGGAACAGAAGCACAGAAGCAGAAATACCTGCCTAAACTAGCTCGTGGAGAGATCCTGGGCTGTTTTGGACTTACAGAACCAAACCATGGAAGTGACCCTGGTGGCATGGAGACCAAAGCTAAATACAACCCCTCCAGCAGGACCTATACCATCAGCGGGGCAAAAACATGGATCACTAGCTCCCCGTATGCTGATATCTGTGTGGTCTGGGCAAAATGCGAGGATGGCCGAGTGAGAGGGTTTATCCTGGAGAGAGGAATGAAGGGATTAAGCACCCCAAAGATAGAGGGCAAGTTCTCCCTCAGGGCCTCAGCCACTGGGATGATCTTAATGGATGAGGTTGAAGTGCCAGAGGAAAACCTGCTGCCCCATGTGTCTGGCCTTGCTGGTCCTTTTGGCTGCCTGAATAATGCCCGTTATGGCATTGCATGGGGCGCTCTGGGTGCTGCAGAATATTGTTTTCATGCCGCCCGCCAGTACACCTTGGACAGGTACGCACCAGAGATGATCTCCATGCTGAAACGGAACTCATGTGGTAAGGCCCTGGACATCGCCAGGCAGGCCAGAGACATGTTGGGAGGAAACGGCATAGCAGACGAATACCATATCATACGCCACGTCATGAACCTAGAGGCCGTCAACACATACGAAGGCACTCATGACATCCATGCTTTGATCTTGGGCAGAGCCATCACTGGACTCCAGTCTTTTACTGTTGGAAAATAAACCCATATTTCTCTCTTAACATGGGTATAATGGACTTTTGCATCTGTCTCTGCAATAAGGGAAACTCTTTATCAACATCCATCCATAAGTGCTTCTATATGTGCTCAAATCTTTTGCTTATTCAATGGGTCCAAACTCACATCTGCTCTTTCTGTGGTCAGGTGCATATCTATAAAGGGAAATAGATCTTCTCTCCAGGGTACTGGTTTGACATTCATTAAAATGTCATGTTACAAAGACAGTTGCGTTATGAAACGGTTTATAATCTTGTCATAAAATTAATTATTGAAGTCATTTATCCACATTATTCATTGGAAAGTGGTAAACAATAATATTCATAAGAATTAAAGGATAAGAGATAATTCATAGCAGTTTCAAAATACTCTTTAGTTAAGGATGCCAGACATCCTGCTCGCACTTTAGAGACTGACCCACTGATCATTGTCAATGACTCTTGTTAATTTTGTTGTATTTATTGAATAAA

Function

symbol description
gcdha Predicted to enable fatty-acyl-CoA binding activity; flavin adenine dinucleotide binding activity; and glutaryl-CoA dehydrogenase activity. Predicted to be involved in fatty acid beta-oxidation using acyl-CoA dehydrogenase and fatty-acyl-CoA biosynthetic process. Is expressed in alar plate midbrain region; eye; immature eye; musculature system; and optic tectum. Human ortholog(s) of this gene implicated in glutaric acidemia I. Orthologous to human GCDH (glutaryl-CoA dehydrogenase).

GO:

id name namespace
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K00252 GCDH, gcdH; glutaryl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_04457561_04464979.mRNA True 1661 mRNA 0.46 9 4457077 4464979

Neighbor

gene id symbol gene type direction distance location
CI01000024_04453773_04455276 NA coding downstream 1801 4453706 ~ 4455276 (-)
CI01000024_04315852_04316615 NA coding downstream 140400 4315654 ~ 4316677 (-)
CI01000024_04306066_04310552 UBE2G2 coding downstream 146525 4305644 ~ 4310552 (-)
CI01000024_04280957_04294789 TSPEARA coding downstream 162288 4280434 ~ 4294789 (-)
CI01000024_04262881_04279056 USP40 coding downstream 177860 4262553 ~ 4279217 (-)
CI01000024_04542156_04543940 NFIL3-5 coding upstream 75454 4540433 ~ 4543971 (-)
CI01000024_04555804_04556790 NA coding upstream 90535 4555514 ~ 4557148 (-)
CI01000024_04565630_04567525 KLF2 coding upstream 100243 4565222 ~ 4567634 (-)
CI01000024_04584906_04590559 NA coding upstream 119475 4584454 ~ 4590721 (-)
CI01000024_04596928_04606949 NA coding upstream 131776 4596755 ~ 4606949 (-)
G123937 NA non-coding downstream 7973 4447190 ~ 4449104 (-)
G123936 NA non-coding downstream 10374 4446403 ~ 4446703 (-)
G123929 NA non-coding downstream 49181 4407294 ~ 4407896 (-)
G123751 NA non-coding downstream 125369 4326871 ~ 4331708 (-)
G123919 NA non-coding downstream 133723 4323124 ~ 4323354 (-)
G123940 NA non-coding upstream 35675 4500654 ~ 4501178 (-)
G123946 NA non-coding upstream 46097 4511076 ~ 4575960 (-)
G123770 NA non-coding upstream 113215 4578194 ~ 4578523 (-)
G123788 NA non-coding upstream 113657 4578636 ~ 4579617 (-)
G123996 NA non-coding upstream 197396 4662375 ~ 4662574 (-)
CI01000024_03938368_03941795 NA other downstream 515153 3938315 ~ 3941924 (-)
G123233 NA other downstream 1902041 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 3630226 824968 ~ 838550 (-)
G125457 NA other upstream 2892258 7357237 ~ 7358104 (-)
G125798 NA other upstream 3510688 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031838 gcdha coding NC_007117.7 CM002890.2 8314451 ~ 8330577 (+)