Gene
RNA
| Item | Value |
|---|---|
| gene id | G123996 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000024 |
| NCBI id | null |
| chromosome length | 8644187 |
| location | 4662375 ~ 4662574 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU140795 | True | 200 | lncRNA | 0.32 | 1 | 4662375 | 4662574 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000024_04596928_04606949 | NA | coding | downstream | 55426 | 4596755 ~ 4606949 (-) |
| CI01000024_04584906_04590559 | NA | coding | downstream | 71654 | 4584454 ~ 4590721 (-) |
| CI01000024_04565630_04567525 | KLF2 | coding | downstream | 94741 | 4565222 ~ 4567634 (-) |
| CI01000024_04555804_04556790 | NA | coding | downstream | 105227 | 4555514 ~ 4557148 (-) |
| CI01000024_04542156_04543940 | NFIL3-5 | coding | downstream | 118404 | 4540433 ~ 4543971 (-) |
| CI01000024_04775678_04783105 | NA | coding | upstream | 112409 | 4774983 ~ 4783105 (-) |
| CI01000024_04849096_04855992 | NA | coding | upstream | 186251 | 4848825 ~ 4856309 (-) |
| CI01000024_04860251_04882047 | ERBB3A | coding | upstream | 197528 | 4860102 ~ 4882804 (-) |
| CI01000024_04890922_04892119 | NA | coding | upstream | 228202 | 4890776 ~ 4892154 (-) |
| CI01000024_04900693_04903891 | ARF2B, ARF3A, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L | coding | upstream | 237276 | 4899850 ~ 4903966 (-) |
| G123788 | NA | non-coding | downstream | 82758 | 4578636 ~ 4579617 (-) |
| G123770 | NA | non-coding | downstream | 83852 | 4578194 ~ 4578523 (-) |
| G123946 | NA | non-coding | downstream | 86415 | 4511076 ~ 4575960 (-) |
| G123940 | NA | non-coding | downstream | 161197 | 4500654 ~ 4501178 (-) |
| G123937 | NA | non-coding | downstream | 213271 | 4447190 ~ 4449104 (-) |
| G123998 | NA | non-coding | upstream | 1604 | 4664178 ~ 4664387 (-) |
| G123999 | NA | non-coding | upstream | 1967 | 4664541 ~ 4665029 (-) |
| G124000 | NA | non-coding | upstream | 2635 | 4665209 ~ 4665540 (-) |
| G123785 | NA | non-coding | upstream | 49287 | 4711861 ~ 4712517 (-) |
| G123783 | NA | non-coding | upstream | 53290 | 4715864 ~ 4717029 (-) |
| CI01000024_03938368_03941795 | NA | other | downstream | 720451 | 3938315 ~ 3941924 (-) |
| G123233 | NA | other | downstream | 2107339 | 2547460 ~ 2555036 (-) |
| CI01000024_00825386_00837898 | NA | other | downstream | 3835524 | 824968 ~ 838550 (-) |
| G125457 | NA | other | upstream | 2694663 | 7357237 ~ 7358104 (-) |
| G125798 | NA | other | upstream | 3313093 | 7975667 ~ 7976047 (-) |
