RNA id: TCONS_00062307


Basic Information

Item Value
RNA id TCONS_00062307
length 1610
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_031810
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 6662479 ~ 6666426 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGCAATGACGTAATCTTACACGCGACGACGTAACCGCCCATAAACAAACATGGCGCACTACGCTCGTTGTTTGCAGGTCTGCCTTCTCGTTTTGAGAACGTATATTAACATACAAAGTAATTTAATTCAACGACTTCACGCAGTTCAAAGACAATGTCACAGACAACGTCTACGCACAAGACGACAAATAGCCTTGGTGTTGATGAGAAGACGGACGGCAACTGTGTGGTCACATCCGCGAGAGCACCGCTGGTGGGACGTCATTGTGCCTGAATTCACTCCAGAAGAGTTCATCCAGAATTTCCGAGTCTCGCGGGAGTCTTTCGAGTACATATGCCGCCGCCTCAGACATATGCTTGAACGAAAAGACACCAATTTCCGCTTGAGCGTACCTGTAAAGAAACGAGTTGCCATTGCGCTCTGCAAGCTCGCCACTGGCAGCGAGTATCGATATGTCAGTCAGCTTTTCGGGGTTGGTGTGAGCACTGTGTTCAACTGTGTGCAGGACTTCTGCAGTGCCGTCATTAAAATTCTTGTGCCCGTGCACATGAAATTTCCAAGTCCCGAAAAGCTGAAGGAGATGGCAGACGTCTTCGAGAATTGCTGGAACGTACCACAGTGTATTGGCTCAATTGATGCACACCACATCCCAATAATAGCGCCTGAAAAAAACCCTCGTGGCTATCTTAACCGAAAAGGCTGGCATTCGGTGGTACTCCAAGCAGTAGTAGACGGGAACGGGCTCTTCTGGGATTTATGCGTTGGTTTTTCTGGAAACCTAAGTGATGCAAGGGTCCTACGACAGTCTTATTTATGGAGTTTGTTGAGTGAAAGAGACTTGCTGAACCACAACAAAGTAGACATCTCCGGTTGTGATGTTGGATACTACCTAATTGGAGATTCAGCTTATCCCTTGCAGAACTGGTTGATGAAGCCGTTTCCCGATATTGGTGGACTGACCCCGCAGCAGGAAAGCTTCAACTCCAGGTTGAGTAGCGCCAGATCGGTTTCGGATCTGAGTTTCAAGAAGCTAAAGGCACGATGGCAGTGTCTCTTCAGGAGAAATGACTGTAAAGTGGAGCTGGTGAAGAAGATGGCTTTGACCTGCTGCGTGCTACACAATATCTGTGAGGAAAAAGGAACCCAGTTTTCAGAGGACCATTCAACTGACCATCTGAACTTGCAGCCCCCTGTTCAGGAATTTATAGAGAATGGACAACCAGAGGGGACGGACGTACGAGAAGCATTATCAGACTTCTTCATCAGACAGAGTGATATTATTCAAGTAGTAGTTTAATGCTATTATGGTTTTCGGATTCTTGGTGGAATCTTTTTATGAATATTCTTATAATTGATGTGTGGAGTATACAGCAGGAAAAATATGTATTGAACATGTCAAGTTTTTTTGGTTCCGTGGCTCTCGTTAGGGATTTGCACATCGATTCCTGTGTATCGATATATAGATACACAGAAGCTTTTAATTTGGTatcgatattttttttttaagtgttgatatttttactatattttaataatttctgcaTTACTAAATGTTTTAGCGCTGTGTACAGGATTGTCAGTGACACTTTGTATACAAGACGTTACACC

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-32 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000065568

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062303 lncRNA upstream 388962 6270875 ~ 6273517 (+) False XLOC_031808
TCONS_00062304 lncRNA upstream 388962 6271793 ~ 6273517 (+) False XLOC_031808
TCONS_00064803 lncRNA upstream 576347 6085236 ~ 6086132 (+) True XLOC_031805
TCONS_00064802 lncRNA upstream 680621 5938465 ~ 5981858 (+) False XLOC_031804
TCONS_00064804 lncRNA downstream 52490 6718916 ~ 6741408 (+) True XLOC_031811
TCONS_00062311 lncRNA downstream 120212 6786638 ~ 6787082 (+) False XLOC_031812
TCONS_00064805 lncRNA downstream 120212 6786638 ~ 6788943 (+) False XLOC_031812
TCONS_00062312 lncRNA downstream 120609 6787035 ~ 6788943 (+) False XLOC_031812
TCONS_00062313 lncRNA downstream 123233 6789659 ~ 6793176 (+) True XLOC_031812
TCONS_00062306 mRNA upstream 120960 6491013 ~ 6541519 (+) True XLOC_031809
TCONS_00062301 mRNA upstream 388960 6270686 ~ 6273519 (+) False XLOC_031808
TCONS_00062302 mRNA upstream 388963 6270732 ~ 6273516 (+) False XLOC_031808
TCONS_00062299 mRNA upstream 424890 6215042 ~ 6237589 (+) True XLOC_031806
TCONS_00062295 mRNA upstream 1678236 4872883 ~ 4984243 (+) False XLOC_031801
TCONS_00062308 mRNA downstream 112688 6779114 ~ 6795988 (+) False XLOC_031812
TCONS_00062309 mRNA downstream 112688 6779114 ~ 6795996 (+) False XLOC_031812
TCONS_00062310 mRNA downstream 114447 6780873 ~ 6796687 (+) False XLOC_031812
TCONS_00062314 mRNA downstream 131094 6797520 ~ 6800387 (+) False XLOC_031813
TCONS_00062316 mRNA downstream 135716 6802142 ~ 6808510 (+) False XLOC_031814
TCONS_00062305 other upstream 389002 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062300 other upstream 446569 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062297 other upstream 978184 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062276 other upstream 2812237 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062273 other upstream 2824251 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062321 other downstream 165620 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062324 other downstream 213501 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062341 other downstream 786929 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062343 other downstream 799847 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062345 other downstream 833702 7500128 ~ 7505016 (+) False XLOC_031829

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000024_07108968_07112980.mRNA True 1235 mRNA 0.43 2 CI01000024 7108968 ~ 7113051 (+)