RNA id: TU142869


Basic Information

Item Value
RNA id TU142869
length 326
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G125827
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 8034309 ~ 8034634 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTAATCTAGCCTTGAGGTCATGAACGCATGAACTAACTGTTCTGCATTTTTCATTGAGAGCATATGTCGTAGTTTAGATATATTTTTAAGATGGAAGAATGCGGTTTTACAGATGCTAGAAACATGGCCTTCAAATGAAAGATTGGTATCAAAGAGCACACCCAGGTTCCTAACTGACGACGAAGACTTAACAGAGCAGCCATCAAGTGTTAGACAGTATTCTAGGTTATTACGTGAAGAAGTTTTTGGTCCAAAAATTAGAATTTCTGTTTTTTCTGAATTTAGTAGTAGGAAATTACTGGTCATCCAATTTTTTATATCAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142867 lncRNA downstream 6319 8027782 ~ 8027990 (-) True G125825
TU142861 lncRNA downstream 18364 8015652 ~ 8015945 (-) True G125819
TU142844 lncRNA downstream 51142 7982914 ~ 7983167 (-) True G125802
TU142843 lncRNA downstream 53215 7980858 ~ 7981094 (-) True G125801
TU142840 lncRNA downstream 58262 7975791 ~ 7976047 (-) True G125798
TU142877 lncRNA upstream 9274 8043908 ~ 8044118 (-) True G125835
TU142889 lncRNA upstream 24248 8058882 ~ 8059124 (-) True G125846
TU142891 lncRNA upstream 25746 8060380 ~ 8060675 (-) True G125848
TU143176 lncRNA upstream 36148 8070782 ~ 8071167 (-) True G126089
TU143209 lncRNA upstream 46626 8081260 ~ 8081501 (-) True G126110
CI01000024_07858315_07901816.mRNA mRNA downstream 132371 7858157 ~ 7901938 (-) False CI01000024_07858315_07901816
CI01000024_07847824_07855700.mRNA mRNA downstream 177968 7847573 ~ 7856341 (-) True CI01000024_07847824_07855700
CI01000024_07697986_07832289.mRNA mRNA downstream 202020 7697986 ~ 7832289 (-) True CI01000024_07697986_07832289
CI01000024_07672858_07695341.mRNA mRNA downstream 338484 7672593 ~ 7695825 (-) True CI01000024_07672858_07695341
CI01000024_07604312_07619531.mRNA mRNA downstream 414778 7604312 ~ 7619531 (-) True CI01000024_07604312_07619531
CI01000024_08161023_08259943.mRNA mRNA upstream 125656 8160290 ~ 8259943 (-) True CI01000024_08161023_08259943
CI01000024_08260814_08264845.mRNA mRNA upstream 226180 8260814 ~ 8264845 (-) True CI01000024_08260814_08264845
CI01000024_08292984_08380058.mRNA mRNA upstream 258350 8292984 ~ 8380058 (-) True CI01000024_08292984_08380058
CI01000024_08450580_08455758.mRNA mRNA upstream 415928 8450562 ~ 8457764 (-) True CI01000024_08450580_08455758
CI01000024_08460577_08479254.mRNA mRNA upstream 425835 8460469 ~ 8479690 (-) True CI01000024_08460577_08479254
TU142839 other downstream 58262 7975667 ~ 7976047 (-) False G125798
TU142437 other downstream 676205 7357705 ~ 7358104 (-) False G125457
TU142439 other downstream 676205 7357754 ~ 7358104 (-) True G125457
TU142441 other downstream 676714 7357237 ~ 7357595 (-) False G125457
TU140468 other downstream 4092385 3936042 ~ 3937057 (-) True G123701

Expression Profile