RNA id: CI01000027_04713891_04717190.mRNA



Basic Information


Item Value
RNA id CI01000027_04713891_04717190.mRNA
length 661
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000027_04713891_04717190
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4713780 ~ 4717359 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAATAGTTTCTGCAGGTGCCCGAAGGGCAGACACAGCTTGAAGCGTGTAAAGGTTGACCAAAGTTTGTCAATATTATTATTGTTGCCAGTTCTTTTGTTGCATAACTATGGAGCTAATTTTGCATGTCAGGCAACTAACAAACAAAGTGACGCATTGCTCTCAAAGCAGACGGAAAAGCACCCTCACCTCACTCATATATACACACTCAGCCTTGACTAATCGTCCCAAACTGAAGCCTCCAACAACATGGAACATGCATGAACCTGCCCAGCCCTGCCTAGCCCAGCCCAAAATAGTCCGCAGAGCATTATATCCCGGACTCAATGGATGTTCTGTGGCTGGTGTGTCTTGCGGTGAGCGTCAGCGCCTGGTACGCGTCTGCGGAGCGACACAGTGTTTACTGGAACAGCTCGAACGCAAAAGACAGCAGCTGGGCAGAGAAGTACATGGAAAGAAACCAGACAGATGGACAGACAGATCAGCCTAAATATATACACACACATGTTAGTTTTACTATAGGCCTATTTGTGCGGGCATCTTATTGACAGACATGATATTTACCATACTGTATCCTTCACACAAACCTGTAGATGTACAGCAAAACATATTTTTTTTAGTAAATATAGCCAAACTTTTACAGATACATATAGAAAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU159804 lncRNA upstream 4785 4708788 ~ 4708995 (+) True G140597
TU159803 lncRNA upstream 5274 4708225 ~ 4708506 (+) True G140596
TU159794 lncRNA upstream 21076 4692134 ~ 4692704 (+) True G140587
TU159725 lncRNA upstream 42303 4671107 ~ 4671477 (+) True G140522
TU159715 lncRNA upstream 200195 4513410 ~ 4513585 (+) True G140512
TU159656 lncRNA downstream 16349 4733708 ~ 4736668 (+) True G140455
TU159625 lncRNA downstream 19535 4736894 ~ 4812799 (+) False G140435
TU159627 lncRNA downstream 59845 4777204 ~ 4779338 (+) False CI01000027_04777135_04777760
TU159623 lncRNA downstream 95057 4812416 ~ 4822645 (+) False G140435
TU159624 lncRNA downstream 95057 4812416 ~ 4822493 (+) False G140435
CI01000027_04655825_04667764.mRNA mRNA upstream 45913 4654783 ~ 4667867 (+) True CI01000027_04655825_04667764
CI01000027_04551022_04551875.mRNA mRNA upstream 161787 4550712 ~ 4551993 (+) True CI01000027_04551022_04551875
CI01000027_04537765_04549872.mRNA mRNA upstream 163851 4537342 ~ 4549929 (+) True CI01000027_04537765_04549872
CI01000027_04497623_04499224.mRNA mRNA upstream 214432 4497623 ~ 4499348 (+) True CI01000027_04497623_04499224
CI01000027_04488278_04495470.mRNA mRNA upstream 217703 4488278 ~ 4496077 (+) True CI01000027_04488278_04495470
CI01000027_04725469_04727486.mRNA mRNA downstream 6534 4723893 ~ 4728283 (+) True CI01000027_04725469_04727486
CI01000027_04768212_04770488.mRNA mRNA downstream 50853 4768212 ~ 4770687 (+) True CI01000027_04768212_04770488
CI01000027_04774573_04774740.mRNA mRNA downstream 57214 4774573 ~ 4774978 (+) False CI01000027_04774573_04774740
CI01000027_04777135_04777760.mRNA mRNA downstream 59128 4776487 ~ 4779313 (+) False CI01000027_04777135_04777760
CI01000027_04835989_04851147.mRNA mRNA downstream 118630 4835989 ~ 4851178 (+) True CI01000027_04835989_04851147
TU157886 other upstream 1193715 3502072 ~ 3520065 (+) True G138953
TU157841 other upstream 1227133 3484387 ~ 3486647 (+) True G138915
TU157376 other upstream 3036920 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 3205964 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 3714599 995970 ~ 999181 (+) True G138290
TU159628 other downstream 20039 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 20039 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 20039 4737398 ~ 4774262 (+) True G140436
TU159637 other downstream 63058 4780417 ~ 4784404 (+) False G140440
TU159638 other downstream 63058 4780417 ~ 4784404 (+) False G140440

Expression Profile