RNA id: TU159196


Basic Information

Item Value
RNA id TU159196
length 332
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G140079
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3393310 ~ 3393641 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAGGTATACCTGTTCAACTGAACATTAATGCAAATACCTAATCAGCCAATCACATGGCAGCAACTCAATGCATTTAGGCATGTAGACAAGGTCAAGATGATCTGCTGAAGTTCAAACTGAGCATCAGAATGGGGAAGAAATGCAATTTAAGTGACTTTGAACATGGCATGGTTGTTGGTGCCAGACGGGCTGGTCTAAGTATTTCAGAAACTGATCTACTGGGATTTTCATGCACAACCATCGCTAAGGTTTACAGAGAATGGTCCGAAAAAGAGAAAATATCCAGCATTTCTGTGCGTGAAAATGCCTTGTTGATGCCAGAGGTCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159195 lncRNA downstream 111 3392854 ~ 3393199 (-) True G140078
TU159146 lncRNA downstream 40597 3351440 ~ 3352713 (-) True G140035
TU159149 lncRNA downstream 56429 3305705 ~ 3336881 (-) True G140038
TU159062 lncRNA downstream 136797 3256124 ~ 3256513 (-) True G139971
TU159129 lncRNA downstream 138142 3254927 ~ 3255168 (-) True G140026
TU159221 lncRNA upstream 24117 3417758 ~ 3418059 (-) True G140101
TU159225 lncRNA upstream 37991 3431632 ~ 3431954 (-) True G140105
TU159255 lncRNA upstream 144608 3538249 ~ 3538545 (-) True G140124
TU159256 lncRNA upstream 145848 3539489 ~ 3540096 (-) True G140125
TU159268 lncRNA upstream 192792 3586433 ~ 3591440 (-) True G140134
CI01000027_03371533_03388330.mRNA mRNA downstream 4175 3371249 ~ 3389135 (-) True CI01000027_03371533_03388330
CI01000027_03301041_03302954.mRNA mRNA downstream 89804 3300900 ~ 3303506 (-) True CI01000027_03301041_03302954
CI01000027_03297095_03298505.mRNA mRNA downstream 93798 3297032 ~ 3299512 (-) True CI01000027_03297095_03298505
CI01000027_03261114_03264008.mRNA mRNA downstream 129302 3261114 ~ 3264008 (-) True CI01000027_03261114_03264008
CI01000027_03186359_03192441.mRNA mRNA downstream 200869 3186099 ~ 3192441 (-) True CI01000027_03186359_03192441
CI01000027_03468269_03469904.mRNA mRNA upstream 74223 3467864 ~ 3470215 (-) True CI01000027_03468269_03469904
CI01000027_03484797_03490716.mRNA mRNA upstream 91101 3484742 ~ 3490953 (-) True CI01000027_03484797_03490716
CI01000027_03492624_03493292.mRNA mRNA upstream 98859 3492500 ~ 3493292 (-) True CI01000027_03492624_03493292
CI01000027_03501726_03510058.mRNA mRNA upstream 107479 3501120 ~ 3510058 (-) False CI01000027_03501726_03510058
CI01000027_03513546_03521352.mRNA mRNA upstream 119860 3513501 ~ 3521352 (-) False CI01000027_03513546_03521352
TU158517 other downstream 1165285 2227919 ~ 2228025 (-) True G139484
TU158538 other downstream 1267282 2125857 ~ 2126028 (-) True G139505
TU158463 other downstream 2073149 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158436 other downstream 2146333 1246564 ~ 1246977 (-) True G139420
TU158434 other downstream 2146626 1246564 ~ 1246684 (-) False G139420
TU159241 other upstream 107893 3510282 ~ 3584679 (-) False G140118
TU159249 other upstream 107893 3512060 ~ 3584679 (-) True G140118
TU159244 other upstream 115711 3509352 ~ 3584679 (-) True G140118
TU159398 other upstream 393737 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159388 other upstream 528755 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033

Expression Profile