CI01000027_03468269_03469904


Basic Information

Item Value
gene id CI01000027_03468269_03469904
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3467864 ~ 3470215 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03468269_03469904.mRNA
AGGTCACCAATTTACCTCATTTCCTCAGAATATTTCGGCTACAATTTTGCGACCGCACTAAAAGCCTGTGTAAATATTTATGTGGCCTAATTTATTTCTGTAATTATTTATTCGACGTACATTGTCTTTCAATTAATACTGCTCTAGTTTGACACTGATTATGTTACCGTACGCCTCACGTGCAAAACAAAACACGTAACGCTCGCCATCAAAACTTTCAACCGTTAAAGAGTCAGATCTTACCCAGCGGTTTGATGGTATTTTCCTCCGACTCCTTGTCCTTCGATTTCCCACTTGACATGAGTGCGGCTATGGAGAAAGCATTCGCCCTAGAAGAGAGCTGTGGTTTTGGGGAAGAGGTGTACTCCATGATGCGGGTGCTCAAAACTATTCTCAACTGCACAAATGTCCAGAGTAAGCCCCGGAATTACTTTAAATTGCAAGATGATATTTTAGTCAGGATTAAGAAGATTGCAACAGGCTGTTACTTCCAAAGCGGCTGGGACATTGTGTGTCGCGTCCTTCTAGTTCTCTTGCACCATTTCATTGTAAGTGTTGGGACACTTGCAGTCTCCTTAATTTCACTAGCCCCTCCGTCGTACACAGCCACGACCAATCGTTGTCCTGCTTCTAGTTCATTGGCTCTTCAACACTCTCCACTGTCTACGAGACGCGAGAGCCCCAGATCTACAGCGTTTAAACCCATTAAGGCGACACTCAAATGCAAATCCAATGCTGCAGATATATTATAAGGGACCTTGGCTGGAAAAATTAGATTACTCTGCAATTGCCAGCGGATAATGTGCTAAAAGCTTTCCCACTTAGCGTAACTTCTTACTGAATATTATTCACACTTTCGGGGCCGACGTGCCAGCCGGCCAAAGGCGACTTTTAACGATACAGCAAACCCCCGAAACGTGGCCGTCAGGTGCAGTGTTGCCATGTCCGCATATTATAAGCGACTTTGGCCTTGCACAGTCACGGCTTTGCTGGCGCTTGACAGAATGTGACCAGTTACCAAACATCCCCACCTGCTGTTGAAACCGCAATATATTATGCCATTATAGTTTAATTCTTAACGTTTAATTCCTATCTATCTATCTATCTATCTATCTATCTATCTTTTTGTGTTTAGATGATATAATTTTTGAAATAAA

Function

NR:

description
T-box transcription factor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03468269_03469904.mRNA True 1157 mRNA 0.43 2 3467864 3470215

Neighbor

gene id symbol gene type direction distance location
CI01000027_03371533_03388330 DPY19L1L coding downstream 78729 3371249 ~ 3389135 (-)
CI01000027_03301041_03302954 NA coding downstream 164358 3300900 ~ 3303506 (-)
CI01000027_03297095_03298505 NA coding downstream 168352 3297032 ~ 3299512 (-)
CI01000027_03261114_03264008 POLR3GLB, POLR3GL coding downstream 203856 3261114 ~ 3264008 (-)
CI01000027_03186359_03192441 NA coding downstream 275423 3186099 ~ 3192441 (-)
CI01000027_03484797_03490716 HERPUD2 coding upstream 14527 3484742 ~ 3490953 (-)
CI01000027_03492624_03493292 NA coding upstream 22285 3492500 ~ 3493292 (-)
CI01000027_03501726_03510058 NA coding upstream 30905 3501120 ~ 3510058 (-)
CI01000027_03513546_03521352 NA coding upstream 43286 3512392 ~ 3521352 (-)
CI01000027_03689861_03690969 NA coding upstream 219224 3689439 ~ 3691211 (-)
G140105 NA non-coding downstream 35910 3431632 ~ 3431954 (-)
G140101 NA non-coding downstream 49805 3417758 ~ 3418059 (-)
G140079 NA non-coding downstream 74223 3393310 ~ 3393641 (-)
G140078 NA non-coding downstream 74665 3392854 ~ 3393199 (-)
G140035 NA non-coding downstream 115151 3351440 ~ 3352713 (-)
G140124 NA non-coding upstream 68034 3538249 ~ 3538545 (-)
G140125 NA non-coding upstream 69274 3539489 ~ 3540096 (-)
G140134 NA non-coding upstream 116218 3586433 ~ 3591440 (-)
G140176 NA non-coding upstream 152207 3622422 ~ 3622647 (-)
G140183 NA non-coding upstream 172731 3642946 ~ 3643225 (-)
CI01000027_02226447_02227499 NA other downstream 1239839 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 1341836 2119131 ~ 2125142 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 2147703 1302034 ~ 1321178 (-)
CI01000027_01241417_01245177 NA other downstream 2220887 1240478 ~ 1246267 (-)
G139117 NA other downstream 3230285 234212 ~ 237579 (-)
G140118 NA other upstream 31319 3509352 ~ 3584679 (-)
CI01000027_03787377_03788902 NA other upstream 317163 3787377 ~ 3790279 (-)
CI01000027_03922380_03931033 NA other upstream 452181 3922242 ~ 3931033 (-)
G141481 NA other upstream 902032 4372247 ~ 4412810 (-)
G141488 NA other upstream 1037260 4507475 ~ 4508971 (-)

Expression


Co-expression Network