RNA id: CI01000029_00057245_00073837.mRNA


Basic Information

Item Value
RNA id CI01000029_00057245_00073837.mRNA
length 2769
RNA type mRNA
GC content 0.41
exon number 11
gene id CI01000029_00057245_00073837
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 57245 ~ 73837 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAGGATCTAAAAATAGTTCAACCTGCAGCCACAGAGTGGCGACCTATCACCATGGAAACCGTGACAGTCCACCACTCTATAAAGCCTAAAAAGAGAACATCTTACACAGGGAACATAGCACCACTTTCTGAGTTTGAGTTTGAGACTGAAATCGATCTGAGTTTCTTGGACTTGTTTCTGGTGGACTACTTACGGAATCTCATCAGAAATCTCATCCTGCCTTTTACTCCGATCAACAGCATAAATATCAAAGATATCGACATGACTACTGTGTGTGGGTTAAATGAAACGGTATATGAGTGCAAGTGTGAGGAGCATCATTCCTGGCCCAATGACACTTGCAGGGCCTATCAGGTGTGTGATGGCAGTGTGGGAGACACTTGTGGATGTATTCAAGCTCTCCCTTCAGAGGGTTCGCTTTGCCAGAGAGTTGTTAGCATGTCATTGACAATAAATCAGCCTTTTGACACCAGTCTTACTGACAGTAATAGTGCGAATTACAAAGATTTATCTGGAAAAATCATTAAAGCACTTGACGCAAGTTATTCTAAGCAGCTAATTGGCTACACTCCTGGTTCTACAGAAGTCCGTGACTTCAGGCCTGGTAGTGTTATAGCAGACTATACAATAAGAGCAACATCCAGCAACCTTGATTTTACAGCAGCAAACACAGCAGTCTCCGACTCCCTAAAAGCACAAGGAATCATTTTAGCTGAAGATGCTTTTGCTCGAAGTGAACAAAAGGACTTCACAACAGGTAATTTTTATCCTCTGCAAAAGCTGGATCTGAACTGCATACAGCCAGACTTTGCAACGGGACCAATAAAATGGACGGTGAATAACAAAGATCCTGCACTAGACAACACAAGATGCACCATTTCAAACAACAGCAGCACTCTCACTGTGAAAAACACTAGTGAAAGTGACAGTGTACCTGCCTCAGGATCTGACATCATGTTAAACTATACTACTAAAAGTTGTAAGGAGGAAACCTTTACATGCCGTCTCAAGGGTCTGCCAACACTACTTGAGTACAGTTACAGCTGGAGCAGAGTCACAGTAAATACAAGCACAGAAAATTATGACTGTGCAAATGCAGAACTTGGAATTGGAAAAACAGATCAAGAAAAGACAGGAATCTGTGGAAGTGGCTTTAAAGGCACTATAACTTACAGTTGTAAATCACATGTTTGGACACCAATACAGGACAACTGTATACTGGATGTTATCTTTGAGCTTAAAAACATAGTTGAGACCTTGCTTGTGGTGGAGATTCCAGAGTTTATGGCTAACCTCAGTAGTGCCACAGCACAGAATAATGTTAATATAACACAGTCTCCTGCTACTGTCCAAGCTATTGTGGATATACTCTTTAAAATTGCTAATTTGTCACAAGATACCGTCATCAATAAGCCAGTGATGGAGAATTTCCTAATAACAGTGAACATCATTGTATCAGTTAATGTCAGTGATACATGGAAACAACTGAACAAAGGAAACACCACAGAAAACACCAGCATTCGACTTCTGGACGCTATTGAGAAGATCAGTGACCGTCTCAAAGATGAGTTTGCGATTAATGAAACATCCATTCAGCTGAATAGAATTGCAATTGAAAACTCATTCAGTATAACATCAACACTGCCAAACTCAACTACGGAGATTGTAATACCACAGGTTCCTAATGTGACTATTGTAACCATCATAATCTTCACAACTCTTGACAATGTCCTACCTACTCGTGATACTAATAATGACAGTAGGAAATCAGATGTGCTTATCAATGGAGATGTGGTTGTTGTTAAGGTGAACCAAACAATTAACAACATTTCTTTTGCGTTTGACATTACTAATCAGTCTTTGAGAAATCCTCAGTGTGTTTTTTGGAACTTCAATCTTGACGGATGGGATTCCACTGGATGTGAAGTAAAGCCCTTAGCGAACCAAACAAGCAAGATTACATGTGAATGCAACCACACAACCTCTTTTTCAATCCTAATGTCTCCGTTTTCCATTGATAACATAGCCTTAGCCTATATAACTTACATTGGTGTAGCTATTTCAATGGCTAGCTTGGTTATATGCCTCATTATTGAGGCTATTGTATGGAAGTCGGTAAGAAGAAATGACACATCCTATATGCGACATGTGACCATAGTCAACATTGCTGTGTCCCTGCTGATCGCAAACATCTGTTTCATCATTGGAGCCGCAATCACAGATCAAGAGCAGCCAACCTCAGTGGGTCGCTGCAGTCCAGCTGTTTTCTTCATGCACTTTTTTTACCTGGCTCTTTTCTTCTGGATGCTAATTTCAGCGCTGTTTCTCTTTTACCGTACAGTCATGGTCTTGTCCCAAATGTCAAGGGCCAAAATGATGGCCATTGCCTTCATAGTCAGTTATGGTGCACCTTTGCTCATAGCGGTCATTACTGTCGCGTCAACAGCTGGACCTCAAAATTATGTTTCCAAACAAGCTTGCTGGCTGAACTGGGATGAATCTAAGGCCCTGCTGGCATTTGTGATTCCAGCTCTCACTATTGTAGCCATAAACCTTGTGGTTTTGATTGTGGTTCTGTATAAGATGTTGAGGAGAGGAGTTGGTGCCACAACTCAACCAGATGAGAAACATGCCCTTGTGGTCATTTTCCGATGTGTGGCCATTTTGACTCCTATCTTTGGTCTAACATGGGGATTTGGAATTGGAACCATGGTGTCACGTAACTTGGGTGTTCATGTGGTGTTTACAATCATCAATTCACTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172121 lncRNA upstream 59299 133136 ~ 133145 (-) True G151519
TU172158 lncRNA upstream 107541 181378 ~ 183092 (-) True G151553
TU172159 lncRNA upstream 109423 183260 ~ 187937 (-) True G151554
TU172209 lncRNA upstream 234011 307848 ~ 308204 (-) True G151603
TU172211 lncRNA upstream 236689 310526 ~ 310749 (-) True G151605
CI01000029_00031332_00056219.mRNA mRNA downstream 1026 31025 ~ 56219 (-) True CI01000029_00031332_00056219
CI01000029_00000004_00021646.mRNA mRNA downstream 34690 4 ~ 22555 (-) True CI01000029_00000004_00021646
CI01000029_00076210_00177393.mRNA mRNA upstream 1793 75630 ~ 178905 (-) False CI01000029_00076210_00177393
CI01000029_00191495_00216075.mRNA mRNA upstream 116358 190195 ~ 216191 (-) True CI01000029_00191495_00216075
CI01000029_00238295_00240090.mRNA mRNA upstream 164171 238008 ~ 240090 (-) True CI01000029_00238295_00240090
CI01000029_00351260_00374024.mRNA mRNA upstream 277423 351260 ~ 374024 (-) True CI01000029_00351260_00374024
CI01000029_00400646_00402700.mRNA mRNA upstream 326482 400319 ~ 403709 (-) True CI01000029_00400646_00402700
TU173481 other upstream 1218412 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 2518329 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 3174940 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 3632386 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 4386506 4472400 ~ 4477212 (-) True G154201

Expression Profile