RNA id: CI01000029_00191495_00216075.mRNA



Basic Information


Item Value
RNA id CI01000029_00191495_00216075.mRNA
length 6354
RNA type mRNA
GC content 0.41
exon number 25
gene id CI01000029_00191495_00216075
representative True

Chromosome Information


Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 190195 ~ 216191 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTGTTTTGAGGGAGTGGCTTGTCATTGTTTTGCTTTAAGAGTAAAGGCCTATTGCACAAATGGTTATTAAAATCACATTATGTTTCCATATGTATAGATCCAGTTGAATACATTATGGTTGTGGAAATGAATGTATCCGAAACTGTGATCAACAAAATCAGATCTTCTGTGACTGCTGTTACACTTCCAATTCAAGTGGACAACAGTACTGAAATTACATCTTTGAACATTTCAACAGTGTGTTCTCTGAATGAAACACAGTATCAGTGTAAATGTGAGGGTCTGTTTGTTTGGCCGAATGACATGTGTCACTCATACGAGGTCTGTCATGACATCACTGATGGTTCATGTACATGTATCAATGCCCTTCCAACTGATGGACAGTTCTGCCAAGCACCACTTTCTGAGTTTGAGTATGAGACTGAAATTGATGTAAGTGTCTTTGACTTGTTCCTGGTGAACTACTTACGGAATCTCATCAGAAATATCAGCCTGCCTTTGACTCTGAGCAACAGCATAAAGATCAAAGATATCGACATGACAACTGTGTGTGGGTTGAATGAAACAGTATATGAGTGCAAGTGTGAGGAGCATCATGTTTGGCCCAATGACACTTGCAGGGCCTATCACGTGTGTGATGCCATTGTGGGAGGCACTTGTGGATGTATTCAAGCTCTCCCTTCAGAGGGTTCGCTTTGCCAGAGAGATATAGATGAATGTCTGTTCAGTCCATCTGTATGTGGTCCAAATTCCACCTGCACAAATCAGTTGGGAAGTTATGGTTGCTTGTGTTCGGATGGATTCACTGTAACAAACTCCAGTCTCACCATCAGCATCAACAACACATGTACAGATGTGAATGAATGTCTTAAGACATCAGAGTTCTGTGGTCCAAACTCTCGTTGCACCAACTCAATTGGGAGTTACAACTGTTCCTGCTTGAGTGGGTTTACTGTAACAAACAGGAATCAGCCAATCAGCACCAGTAACCCATGCATTGATATAAATGAATGTTTTTTCAGTCCACCTGTATGCGGTCCAAATGCAAACTGCACAAATGAAACAGGAAGATTCAATTGCTCATGTTTGGATGGATTCACTGCAACAATCTCAAGTCTCCCTGTCAGCATCCATAACCCATGTACAGCCGAGCAGTCTGCCAAGCTGACACCCTTTATCACACTGTTTGGACGGTACTTCTTCAATCATTTGCCCTTCGGTATTGCATCAGCGGCTGAGCACTTCCAAAATCGTATGGAAACTGAAGTCACTGAGGGCCTGGATGGAGTAGTCTGTGACATGGATGATGTGCTTGTGTGGGGTTGTTCTCAAGAGGAGCATGATATGCACCTTCACGCAGTGCTCCAAAAGATGGAAAATGGTGAGTCAACCCAATTATTGTGCTTCGTCCCAGCGTGTAGTCAAGTTTCTCTGTCACAACATCTCAGACAAAGGAGTGTAGCCGGATCCAGCCAATTCAAAGTATCGTCATATGGACTGGGAGCAGTTCTGCTGCAAAAAGAGGGTGATGATTGGAGACCTGTTGCCTACACGTCACGGTCTCTTACTCCTGTTGAGCAAAGATACGCGCAGGTAGAAAAGGAGGCCCTGGGGCTGACCCGGGCATCACCACTTTCTGAGTTTGAGTATGAGACTGAAATTGATTTAAGTTTCTTGGACTTGTTCCTGGTGAACAACTTACGGAATCTCATCAGAAATCTCAGCCTGCCTTTGACTCTGAGCAACAGCATAAATATCACAGATATCGACTTGACTACTGTGTGTGGGTTAAATGAAACGGTATATGAGTGCAAGTGTGAGGAGCATCATTTCTGGCCCAATGAGACCTGCAGGGCCCATCAGGTGTGTGATGGCAGTGTGGGAGGCACTTGTGGATGTATTCAAGCTCTCCCTTCAGAGGGTCTGCTTTGCCAGAGAGATATAGATGAATGTCTGTTCAGTCCATCTGTATGTGGTCCAAATTCCACTTGCACAAATGAAATGGGAAGTTACAATTGCTCGTGTTTGGATGGATTCACTGCAACAAACTCAAATCTTCCCATCAGCATCAACAACACATGTACAGACAGCAGAGTTCTGTGGTCCAAACTCTTGTTGCACAACTCATTTGGGAGTTACAGCTGTTCCTGCTTGAGTGTTTTTACTGTAACAAATGTGAATCAACCAGTCAGCACCAGTAACTGGGGTTGTGCTGCACCACTTTCTGAGTTTGAGTTTGAGACTGAAATTGATCTGAGTTTCTTGGACTTGTTCCTGGTGAACTACTTACGGAATCTCATCAGAAATCTCAGCCTGCCTTTGACTCTGATCAACAGCATAAATATCAAAGATATTGACATGACTACTGTGTGTGGGTTAAATGAAACGGTATATGAGTGCAAGTGTGAGGAGCATCATTTCTGGCCCAATGACACCTGCAGGACCTATCAGGTGTGTGATGGCAGTGTGGGAGGCACTTGTGGATGTATTCAAGCTCTCCCTTCAGAGGGTCCGCTTTGCCAGAGAGTTATTGGAATGTCAATGACAATAGATCAGACTTTTGACATCAGTCTTACTGACCCTAATAGTGAGAATTTCAGATATTTATATGGAAAAATTGCACCAATAATTGAGTTCACTTATTCTAGTAAGCTAGTTGGCTACATTCCTTTTTCTGCCAGACCTACTGGCGTCAGGCCTGGTAGTGTTATAGCAGACTACACAATAGGAGCAACATCCAACAACCTTGATTTTACAGCAGCACACACAGCAGTCACTGAGTCTCTAAAGACGGAAGGAATTGCTTTAGCTGAAAATGCTTTTGCTCAAAGTGAACAAAAGGACTTCACAACAGGTAATTTATATCCTCTGCAAAAGCTGGATCTGAACTGCATACAGCCAGACTTTGCAACGGGACCAATAAAATGGACGGTGAATAACAAAGATCCTGCACTAGACAACACAAGATACACCATTTCAAACAACAGCAGCACTCTCACTGTGAAAAACACTAGTGAAAGTGACAGTGTACCTGCATCAGGCTCTGACATCCTATTAAACTATACTATTAAAAGTGGGGATTGTAAGGAGGAAACCTTTACATGCCGTCTCAAGGGTCTGCCAACACTACTTGAGTACAGTTACAGCTGGAGCAGAGTCACAGTAAAGACAAGCACAGAAAATTATGACTGTAGAGATGAAGAAATTGGACTTGGAAAAACAAATGAAGAAAAGACAGGAATCTGTAGAAGTGGCTTTAAAGGCACCATAACTTACAGATGTGAACCACCTGTTTGGACACCAGTACAGGACAACTGTGTACTTGAAGTTATCTTCAACCTTAAAAACAGAGTTGAGACATTGCTTGTGGTGGAGATTCCACAGTTTATGGCTGAACTCAGTAGTGCCACAGCACAGAATAATGTTAATATAACACAGTCTCCTGCTACTGTCCGAACTATTGTGGATATACTCTTTAAAATTGCTGATTTGTCACAAGCTACTTTAATAAATAGCATTGTGATGGAGAATTACCTAAAAACAGTGAACATCATTGTATCAGGTAATGTCAGCGATACATGGAACACATTGAACAAAGGAAACACCACAGAAAACACCAGCATTCGACTTTTGAGCTCTATTGAGAAGATCAGTGACCGTCTCAAAGATGAGTTTGCGATTAATGAAACATCAATTCAGCTGAATAGAACTACAATTAATAACTCATTCAGTATAACATCAACACTGCCAAACTCAACTACGGAGATTGTAATACCACAGGTTCCTAATGTGACTACTGTAACCATCATAATCTTCACAACTCTTGACAATGTCCTACCTACTCGTGATACTAGTAATAAAAATGACACTAATAATTCATTTGTGCGCATCAATGGAGATGTGGTTGTTGTTAAGGTGGACCAAACAATTAACAACATTTCTTTTGCGTTTGACATTACTGATCAGTCTTTGGGAAATCCTCAGTGTGTCTTTTGGAACTTCAATCTTGATGGATGGGATTCTACTGGATGTGAAGTAAAGCCCTCAGTGAATGAAACGGGAAAGGTTACATGTGAATGCAACCACACAACCTCTTTTTCAATCCTAATGTCACCGTTTTCCATTGATAACATAGCCTTAGCCTATATAACTTACATTGGTGTAGCTATTTCAATGGCCAGCTTGATTTTGTGCCTCATTATTGAGACTATTGTATGGAAGTCAGTGACAGGAAATGACACGTCCTACGTGCGACATGTCTCCATGGTCAACATTGCCGTGTCCCTGCTGATCGCAAACATCTGTTTTATCATTGGAGCTGCAATTGCAGAACAAGAGCAGCCAACCTCAGTGGGTCGCTGCAGTCCAGTGGTTTTCTTCATGCACTTTTTTTATCTGGCTCTTTTCTTCTGGATGTTAATTTCAGCGCTGTTGCTCTTTTACCGTACAGTCATGGTCTTTTCGCGAATGTCAAGGTTCAGAATGATGGTCATTGCCTTCATAGTCGGTTATTGTACGCCTTTGCTCATAGCGGTCATTACTGTTGCATCGACAGCTGGACCTCAAAAATATATTTCCAACAGAGCTTGCTGGTTGAACTGGTTTGAGTCTAAGGCACTGCTGGCATTTGTGATTCCAGCTCTCACTATTGTAGCCATAAACCTTGTGGTTTTGATTGTGGTTCTGTATAAGATGTTGAGGAGAGGATTTGGTGATCATCAACCAGATGAGAAACATGCCCTGGTGGTCATTGCCCGATGTGTGGCTATATTGACTCCCATCTTTGGTCTAACATGGGGATTTGGAATTGGAACCATGGTGTCACCAGACTATGGTGTTCATGTGGTGTTTGCACTCCTCAATTCACTGCAGGGATTCTTTATTTTGGTGTTTGGAACGATTTTAGACAGCAAGATACGTGAGGCACTGGCAAGAAGGCTGTCACTAAGGAACCTTACCAGCTCTATCCATACCAGGGTACTTGGCAACAAACTGCATCTGATTCATGAGTTCTTCATGATATATGTACTCAGTTTACAGCTGATATCTTAAATCTCTAAATTACAGAGTACTAGTGCAGGACCATCATCTTCAAGCGGACTGGGTTTGTTTAGAAGGAAACGAAGGGGAAGTAAGTAATACTATTTACAGTCTGCTGATAGACACCTGCTTTCAAATGCTCCAGCTTTCAAATTCAAAGACTTCCGTGTGCTTTCAAACGCTCCTGTGCAATGATCATTGTAGCCAATCACAGACATATATGTTGAGCGTGTGAACACAATGGCCAATCAGAGGTGTTTACGAATCCTCTCAACAGCGCTCAAAGCATCACATTTTTAATATTTCAGTACCGACTTGATATCGAAGCACCGCGCCGCTTTACTAAGGATAGGGGCCGCTCACATGTCACGTCTAAAAACGCATGGAAAGTGCAGCCGCGCCACTTTCTTTCCGAAGCGCTTGCGCTCCCGTGGCGTCTGTTGTTGCTATGCACCCATGAACTGCGCCCAACCCCAATTGATTTCTAGCCCTTGCATTAGCTCTACTACTACATACATTTATGGAGATGTTTGGCTGAGCTTTTTAATGTTTTGGCACGGAAAAAATGCAAAGATTACAGATAAAACTGCAATTAAGTTGCGATTAATCACGAGTTAACTCATGACAATCATGCGATTAATCTTGATTAAATATTTTAATTGATTGACAGCCCTTGTGTGTGTGTGTGTGTGTGTGTGTATATGTATGTGTGTGTATATATATATATATATATATATATATATATATATATATATATACAAAACATTTGTGTATATAATTTAAGTAACATAATAATTATTATTTGCAGATGGGTACAACATATCTGAAACCAGTGGTTTGTCAGCAGCAACATCTTCAAACATCTCCAGTAGCGCCAATACTTTTATGAATACATAATGGACTGCTTCGTTAGCTATAGTCTACTTCATTACCAATTAACCAACTTTTCCAAAAGTGCTTCTACATTGCAGATATACTGTATGTAAACTGCCTTTTCTATTACTGGTTTCTGGGAAGAACTGTTCTGAAGTCCTTTTAAAAAAATCAGGTTACAATTTACAAATTTGATATGTAAATAAGGGTACATTTTAGAATAATAATGACGTGGTTTATGGCATGATAAGATGTGCTTTCATATGGGTCTAGAGCAATAGCTTTGTTATTTGTTTTGTGTAATGTATTTTTTGTTCGCCATTTTAAATGAATCAGATTTGCTGCACAGTTGGTGCCATTAAATGTATCTTGTTCTATACTGTCTGGGGAAAAAAGAACAGAATCAAATTTTAAATGTTACTGCTTCACCAATAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU172159 lncRNA downstream 2258 183260 ~ 187937 (-) True G151554
TU172158 lncRNA downstream 7103 181378 ~ 183092 (-) True G151553
TU172121 lncRNA downstream 56112 133136 ~ 133145 (-) True G151519
TU172209 lncRNA upstream 91657 307848 ~ 308204 (-) True G151603
TU172211 lncRNA upstream 94335 310526 ~ 310749 (-) True G151605
TU172216 lncRNA upstream 100444 316635 ~ 316880 (-) True G151610
TU172219 lncRNA upstream 102326 318517 ~ 326627 (-) True G151612
TU172233 lncRNA upstream 125320 341511 ~ 348897 (-) True G151624
CI01000029_00076210_00177393.mRNA mRNA downstream 11290 75630 ~ 178905 (-) False CI01000029_00076210_00177393
CI01000029_00057245_00073837.mRNA mRNA downstream 116358 57245 ~ 73837 (-) True CI01000029_00057245_00073837
CI01000029_00031332_00056219.mRNA mRNA downstream 133976 31025 ~ 56219 (-) True CI01000029_00031332_00056219
CI01000029_00000004_00021646.mRNA mRNA downstream 167640 4 ~ 22555 (-) True CI01000029_00000004_00021646
CI01000029_00238295_00240090.mRNA mRNA upstream 21817 238008 ~ 240090 (-) True CI01000029_00238295_00240090
CI01000029_00351260_00374024.mRNA mRNA upstream 135069 351260 ~ 374024 (-) True CI01000029_00351260_00374024
CI01000029_00400646_00402700.mRNA mRNA upstream 184128 400319 ~ 403709 (-) True CI01000029_00400646_00402700
CI01000029_00520844_00524249.mRNA mRNA upstream 303643 519834 ~ 524342 (-) True CI01000029_00520844_00524249
CI01000029_00532933_00536043.mRNA mRNA upstream 316454 532645 ~ 536758 (-) True CI01000029_00532933_00536043
TU173481 other upstream 1076058 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 2375975 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 3032586 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 3490032 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 4244152 4472400 ~ 4477212 (-) True G154201

Expression Profile