RNA id: CI01000029_00351260_00374024.mRNA


Basic Information

Item Value
RNA id CI01000029_00351260_00374024.mRNA
length 2658
RNA type mRNA
GC content 0.50
exon number 3
gene id CI01000029_00351260_00374024
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 351260 ~ 374024 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTGCTTCATAGGAAGAACCGGGGCATCATCTGCTGCAAGCTGGATCTGGAGGAGGATGCTGCGGCAAGTGATACACAGAGGGCTGAAAGCTTCTTTCTACTGGCTGGGTTTGTTCGTGAGTAGGCATCCGGTGTTCTTCCTCACCGTCCCCGCAGTCCTGACCATTATTTTCGGATCCACGGTGCTGAGCCGGTTTAAGCCCGAAACGGACCTGGAGATCCTGGTCGCCCCGACGCACAGCCTCGCGAAGATCGAGCGGAGTCTCGCCAACAGCCTCTTCCCCATCGACCAGTCCAAGCACAAGCTGTACTCGGACCTGCACACCCCCGGCAGATATGGCAGACTCATTCTACTGGCCAAATCCGGGGGAAATATCCTGGAACTGGCCGAGCAGGTGCTCCAGGTGCACAAGAAGGTCCTGGATATGCGTGTCAATTATAAAGGCTTCAATTACACTTTCGCGCATCTCTGTGTCCTGAGCCACCGGGACAAGAGATGCCTCCTGGATGATATCATCACCATATTCGAAGACATTCGCTTAGCTGTTCTGTCTAACAGCACTTTTTCCAAGGTCCCCGTGAGCTATCCGAATACAACGTTAAAGGATGGTCGGGTGTCCTTTATTGGCCATCAGCTGGGCGGCGTGGCCTTGTCCACAAATAGCCGGGACCAACAGGTCAAGTTTGCTCGCGCCATCCAAATCACCTACTACCTCCGTAACCTTGGCCCAGTGGTGCAGGACATCATTGCTGAAAAGTGGGAGAGTGAATTCTGTAAGCTGGTGTACCAGCTGGCTACAGACAGCCAGGAGCTACAAATCCAGTCGCTTACATCCTTCAGCTTATGGCGGGACTTCCACAAGACAGGAGTACTGGCCAAAAGCGAGGTATTGGTCAGCTTGGTGCTGGTGCTCCTGGCAGCCACCATCTCCAGCTCTATGCGGGACTGCTTGCGTGGGAAACCCTTCCTGGGCCTGTTGGGCGTCCTCACCATCTGCATCGCCAATGTGACGGCAGCTGGGATTTTTTTCATCTCTGATGGGAAATTTAACTCTACGTTGCTTGGGATCCCCTTTTTTGCCATGGGACATGGAACAAAGGGTGTGTTTGAGCTTCTGGCAGGCTGGAGAAGAACCAGAGAGAGTTTGCCCTTCAAGGAGAGGGTGGCAGATGCATTCGCTGACGTGATGGTGTGTTACACCATGACCAGCTCGCTCTATATTATCACCTTCGGCATGGGTGCCAGTCCTTTCACCAACATTGAATCCGTGAAGGTCTTTTGCCAGAGCATGTGTGTAGCAATCCTGGTGAACTACTTCTACGTGTTCTCGTTCTATGGCTCCTGCCTGGTGTTTGCCGGACAGCTGGAGCAAAACCGCTATCACAGCGTCTTCTGCTGCAAGATCCCCTCTGTGGAGTATCTGGACCGCCAGCCCACTTGGTTTAAGACCATGATGAGCGACGGTCACGACCTATCTACGCACCACGACAGTGTGCCGTACCAGAACCACTTCATTCAGCACTTCCTGAGGGAGCATTACACAGAATGGATTACCAACACCTATGTCAAGCCTTTTGTGGTTATCCTCTACCTGATTTACGCCTCCTTTTCATTCATGGGATGTTTACAAATCAGTGATGGCTCCAACATAATTAATCTGCTAGCGAGTAATTCGCCCAGTGTGTCATTCGCCCTGACTCAACAGAAATACTTCAGCAACTACAGTCCGGTGATTGGGTTTTACATCTACGAACCCATTGAGTATTGGAACTCCACAGTGCAGGAGCACCTCAAGACATTGGGCCAGGGTTTTAATAAGATTTCATGGATCGATAATTACTTTCACTATCTGAGAGTCGTTAATGTCAGCGCATCAACCAAAAGTGATTTCATTAACATCCTCAAGACTTCTTTTTTGAGGAGCCCAGAATATCAACACTTTGTGGATGACATAATTTTCTCTAAAAACGGAGATGAGTATGACATCATCGCGTCCAAGATGTACTTGGTGGCCAGGACGACCGAGAAGACCAGGGAGGAGGTCGTGGAGTTGCTGGAGAGACTTCGACCTCTCTCCCTTATCAACAGCATCAAGTTCATCGTTTTCAACCCAACCTTTGTGTTTATGGACCGCTACAGTTCCTCCATCATCTCCCCCATCCTGACATCGGGTTTCAGCGTGCTCACTATTCTCATCCTCACCTTCTTCCTGGTCATTAACCCACTGGGGAACTTCTGGTTGATCTTGACCGTCACCTCAGTGGAACTGGGCGTCTTGGGTCTCATGACGCTTTGGAATGTAGACATGGACAGCATCTCTATCCTGTGCCTTATTTATACTCTCAATTTTGCCATGGATCACTGTGCCCCCCACCTCTACACATTCGTACTGGCCACTGAGCATACGCGGACTCAGTGCATCAAGATCTCTTTAGAGGAGCATGGGGCCGCCATTTTGCAGAACACTTCGTGTTTTGTAATTGGGATAATGCCTCTTCTCTTTGTGCCTTCTAACCTGACCTACACACTGTTCAAGTGTTCCCTTCTCACAGCCGGCTGCACAGTTCTGCACTGTTTCGTCATCCTACCGGTGTTTTTGACATTCTTCCCGCCCTCTAAGAAGCGGCACAAGAAAAAGAAACGGGCCAAACGGAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172233 lncRNA downstream 2363 341511 ~ 348897 (-) True G151624
TU172219 lncRNA downstream 24633 318517 ~ 326627 (-) True G151612
TU172216 lncRNA downstream 34380 316635 ~ 316880 (-) True G151610
TU172211 lncRNA downstream 40511 310526 ~ 310749 (-) True G151605
TU172209 lncRNA downstream 43056 307848 ~ 308204 (-) True G151603
TU173282 lncRNA upstream 150816 524840 ~ 525237 (-) True G152556
TU173283 lncRNA upstream 151563 525587 ~ 525889 (-) True G152557
TU173275 lncRNA upstream 275852 649876 ~ 651768 (-) True G152551
TU173515 lncRNA upstream 704234 1078258 ~ 1081280 (-) True G152759
TU173532 lncRNA upstream 802745 1187612 ~ 1189153 (-) True G152776
CI01000029_00238295_00240090.mRNA mRNA downstream 111170 238008 ~ 240090 (-) True CI01000029_00238295_00240090
CI01000029_00191495_00216075.mRNA mRNA downstream 135069 190195 ~ 216191 (-) True CI01000029_00191495_00216075
CI01000029_00076210_00177393.mRNA mRNA downstream 172355 75630 ~ 178905 (-) False CI01000029_00076210_00177393
CI01000029_00057245_00073837.mRNA mRNA downstream 277423 57245 ~ 73837 (-) True CI01000029_00057245_00073837
CI01000029_00031332_00056219.mRNA mRNA downstream 295041 31025 ~ 56219 (-) True CI01000029_00031332_00056219
CI01000029_00400646_00402700.mRNA mRNA upstream 26295 400319 ~ 403709 (-) True CI01000029_00400646_00402700
CI01000029_00520844_00524249.mRNA mRNA upstream 145810 519834 ~ 524342 (-) True CI01000029_00520844_00524249
CI01000029_00532933_00536043.mRNA mRNA upstream 158621 532645 ~ 536758 (-) True CI01000029_00532933_00536043
CI01000029_00553198_00596492.mRNA mRNA upstream 178657 552681 ~ 596492 (-) True CI01000029_00553198_00596492
CI01000029_00653876_00662303.mRNA mRNA upstream 279590 653614 ~ 662874 (-) True CI01000029_00653876_00662303
TU173481 other upstream 918225 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 2218142 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 2874753 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 3332199 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 4086319 4472400 ~ 4477212 (-) True G154201

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035943 True 4604 mRNA 0.47 3 NC_007131.7 36066408 ~ 36107422 (-)
bowfin (Amia calva) AMCG00004193 True 1191 mRNA 0.51 4 CM030121.1 37198923 ~ 37231208 (+)