RNA id: CI01000029_00653876_00662303.mRNA


Basic Information

Item Value
RNA id CI01000029_00653876_00662303.mRNA
length 2711
RNA type mRNA
GC content 0.47
exon number 15
gene id CI01000029_00653876_00662303
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 653614 ~ 662874 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACTGACTTACACATAAGATAAGTTCACATATGCTGGACTTCTTCATTCATTTAACCCCATTAAACCACGCCCCTTCACAATCGACTGCAAGCTTGCATTTATTTTTGAGTGCAACAAAATTGTGATTTAAAATATATTGTGTGTGTTTTAAGCCATTTTGCACATATTGTGTAAATATTTATTTTTGCCTGTTATAGTGTAATTGCACATTTAAGTAGTGAGTAATAATAATTAACTACATGTACTTACTATAGGTTTAGATTAGGGTTTAGGTTAATTGTATGTAATTAAGCACAATTTATAGTAATTACTATAGTAACTACATGCAACAAGTGTAACAAAGACACTGTAAAATAAAGTGTTTTTTAGAATGTTTAATCAGTAAATCTAGACAATCAGTATAACTTGGATATTCTGTTTGCATGTTTGCCTAAACAGTCTTTTAATTTTTTACAGCACGTCACCGGCAGTCCTTCATGATGACCCAATGGGCAACTATTAACTGACCCTTCACTGATCATCCAGGGGCCACATCGCTCTGTGTGCTCCTCCCCACACCTCACGGCATCATGGGGGACGTAGTTCGAATGCACTTCAGCACAGTGGATTATATCATTTTCGCCGTGCTGCTAGTGGCCTCCACTGGAATCGGCCTTTACTATGCCTTCTCAGGGGGTCGCCAGAGGACCACACAGGAGTTCCTGCTGGCCGACCGCAGTATGCGCTGCCTTCCCGTGTCCCTTTCACTGCTGGCCACGTTTCAATCAGCGGTGGCCATCCTGGGTGCTCCATCTGAGATTTACACACATGGCACGCAGTACTGGTTCCTGGGCTGCTCCTACTTCCTGGGCCTGCTCATCCCTGCACACATTTTCATACCGGTTTTCTATCGGCTCCGCCTTAGCAGCGCCTATGAGTATCTGGAGCTTCGTTTTAGTCAAAGTGTTCGGATATGTGGCACTGTGACCTTCATCTTTCAGATGGTTATCTATATGGGAGTTGTTCTGTATGCTCCCGCACTTGCACTAAATGCAGTAACAGGTTTTGACCTTTGGGGGGCAGTACTAGCCATGGGATTGGTGAGCACGCTTTATACAGCATTGGGTGGTCTAAAAGCAGTGATCTGGACAGATGTGTTCCAGACAATCGTGATGTTTGCAGGGCAGCTGGCAGTGATTGTGGTAGGTACCCACCAGGCTGGTGGCATCGCCGAAGTATGGAGGAAAGCACAAAACGGCAGCCGTATCTCAGGCCTTGACCTGAACCCTGACCCCTTAGAAAGGCACACATTTTGGACTCTAGGAGTGGGGGGCGTTTTCCTCATGCTGGCCCTGTATGGAGTGAATCAGGCTCAGGTCCAGAGATACCTCAGCTCCCGCACAGAGAAAGAGGCCATCATGTCCTGCTATGCTGTGTTTCCATGCCAACAGATCGTGCTCACATTGGGCTGCTTAATGGGTCTTGTTATGTACGCTCGATATGGGGAGGAGAGCCCCCTGGATATGGGCTACGTCAAAACTAATGACCAGATGGTGCTGTACTTTGTAATGGATGTGTTAAGAGATCTTCCTGGTTTACCAGGACTGTTTGTTGCCTGCCTGTTTAGCGGAGCTCTCAGCACAATCTCATCTGCCTTCAACTCCCTGGCAACGGTTACCATGGAGGACCTAATTAAACCACATGTCCCTGTCATGACGGAGGCTCGTGCCACACTGTTATCAAAAATGTTGGCTATTGGCTATGGGCTTGTGTGTCTAGCCATGGCGTACATTGCATCCTTAATGGGCTCTGTTCTGCAGGCAGCACTCAGTATATTTGGGATGGTGGGAGGACCTCTTCTTGGAGTTTTCTGTCTTGGGATGTTTTTCCCTTGGGCCAATTCCACTGGTGCTCTGGTTGGACTGGCATCAGGGCTGATCATGGCTTTCTGGATCGGTATCGGCAGCTTTGTTTCACGAGTGGCTGCATCTGCACCACCTGTGATAAATGGCACCATCATACCTGATGTAGGAAACATGACAACAGCTGTCATGACGACACTCATCACAACTAAACCCAGGCCTACTGGAGTTCAGGCTCTGTACTCTTTATCATACATGTGGTACAGTGCTCATAATTCTGCTACGGTTGTGGTGGTGGGACTACTGGTCAGCTTTCTCACAGGGCCATGGAAGGAGAAGGACTTAAACCCAGGTACGATTTACCCTGTGCTTGGCAATTTGCTGTTCTTTCTGCCCCAACGGTACAAGGAGAAACTATGCTGTGTAACCCCACTGGAAGACAAGTCCAAAGTTCTGGACCACCAGCCTTACCAGATGGCCCAGAAAGAGATCAACGGTGTTGCCTGCACTAAAGAGGAAGACAAGATTAGGGAAGAGGAGGGAGAACAGATAACCGCCCAGCCAACTTGTAACCTGGCCCATACGTTACAGGAAACAGCCTTGTGAAATCTCCCACACTGCGAAAGACCTAAGGGACACTTAGTTTCCCACAGACTCAAGGAGGACAACATCTGTTAAGATGTCAAATTTACAAAATCTCACTGTTCCCTCCTGCTACATTGGGTAAGAACCCTAAGTCCATAAGCTGTGGTTTGTGTCGTGGGCCCTCTGCAAAACTGGTACGCTGTGCCCTGAACCGCCAGCGATGGAGGTGAGGGGTTGTCCTGTTTATATGTGATACTTTATGATGTCAGTGGTCTGTCATAAA

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K14386 SLC5A6, SMVT; solute carrier family 5 (sodium-dependent multivitamin transporter), member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173275 lncRNA downstream 1846 649876 ~ 651768 (-) True G152551
TU173283 lncRNA downstream 127725 525587 ~ 525889 (-) True G152557
TU173282 lncRNA downstream 128377 524840 ~ 525237 (-) True G152556
TU172233 lncRNA downstream 304717 341511 ~ 348897 (-) True G151624
TU172219 lncRNA downstream 326987 318517 ~ 326627 (-) True G151612
TU173515 lncRNA upstream 415384 1078258 ~ 1081280 (-) True G152759
TU173532 lncRNA upstream 513895 1187612 ~ 1189153 (-) True G152776
TU173477 lncRNA upstream 690662 1354901 ~ 1355173 (-) True G152721
TU173686 lncRNA upstream 776635 1439509 ~ 1439718 (-) True G152918
TU173702 lncRNA upstream 791918 1454792 ~ 1455019 (-) True G152933
CI01000029_00553198_00596492.mRNA mRNA downstream 57122 552681 ~ 596492 (-) True CI01000029_00553198_00596492
CI01000029_00532933_00536043.mRNA mRNA downstream 116856 532645 ~ 536758 (-) True CI01000029_00532933_00536043
CI01000029_00520844_00524249.mRNA mRNA downstream 129272 519834 ~ 524342 (-) True CI01000029_00520844_00524249
CI01000029_00400646_00402700.mRNA mRNA downstream 249905 400319 ~ 403709 (-) True CI01000029_00400646_00402700
CI01000029_00351260_00374024.mRNA mRNA downstream 279590 351260 ~ 374024 (-) True CI01000029_00351260_00374024
CI01000029_00671340_00676497.mRNA mRNA upstream 8317 671191 ~ 676497 (-) True CI01000029_00671340_00676497
CI01000029_00740836_00741866.mRNA mRNA upstream 77560 740434 ~ 741866 (-) True CI01000029_00740836_00741866
CI01000029_00743128_00743689.mRNA mRNA upstream 80228 743102 ~ 743689 (-) True CI01000029_00743128_00743689
CI01000029_00744455_00749027.mRNA mRNA upstream 81410 744284 ~ 749027 (-) True CI01000029_00744455_00749027
CI01000029_00765372_00789010.mRNA mRNA upstream 102379 765253 ~ 789010 (-) True CI01000029_00765372_00789010
TU173481 other upstream 629375 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 1929292 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 2585903 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 3043349 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 3797469 4472400 ~ 4477212 (-) True G154201

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035953 True 2320 mRNA 0.49 16 NC_007131.7 36646761 ~ 36671660 (-)
bowfin (Amia calva) AMCG00004186 True 6154 mRNA 0.46 16 CM030121.1 36748856 ~ 36765206 (+)