RNA id: CI01000029_00671340_00676497.mRNA


Basic Information

Item Value
RNA id CI01000029_00671340_00676497.mRNA
length 908
RNA type mRNA
GC content 0.42
exon number 6
gene id CI01000029_00671340_00676497
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 671191 ~ 676497 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACTCCGAACGGAAAGGCGGCAGTATTGCAAAAAGTACTGGCGTAAACAAAACGTCATCGGCGTGCGACAGGAAATTGTCACAGAAAACGCGATGGCAGAATCTAGGACTGAGAAAGTAATCAAGCTTGTTCCTGAGAACCTTCTCAAGAAACGCAAGGCGTACCAGGCTATTAAAGCAACTCAAGCCAAACTTGCGTTACAGCAGAAGAGAAAAGGCCAAAAAGGAATTCCCTTGAAGTTTAAGCGCTTGGAGGAGTTTTTGAAAAACAGGTTTAATTTTCTCTTTATGATTGCTTCTAGGATCAAAGGTGTAAGCCTCAAAGTGATGCGTGTCATTCAGATGCTGAGGCTGAGAAAGATCTTCAGTGGCACCTTTGTGAAAGTCAACAAGACTTCTATACAAATGCTTAAGACAGTGGAACCTTATGTTGCATGGGGGTATCCCAACTTGAAATCTGTCCGTGAGCTCATATTAAAAAGAGGTCAGACAAGGATTAATAAGAGAAAGACTCCTCTGACCGACAATACACTCATAGAGCAGCATCTCGGACAATACGGGATCATCTGTTTGGAGGACCTTATACATGAGATCTATTCTGCCGGAAAGAACTTCAGGGTGGCAAACAACTTCCTGTTGCCGTTCCATTTATCAGTACCAAGACATGGTGCTAGAGACAAAGTTGGATTACTGAAAGATGTTGGAGACCCTGGACCAAGAGCTGAGGACATAAATAGAGTCATCAGGAAACTCAACTGAGCTAATGGACTCTCATGGAATGTTGTTTTGTCACCTTCCAGATGCACCAAAAAAAGGAGAGAACAGAGCATTTCTCAAAACTCAAGGTGCAAATTAAATGGACTGAATAATTCAGTGTGTAGTGTTGACCTCTGTATAGTTGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173275 lncRNA downstream 19423 649876 ~ 651768 (-) True G152551
TU173283 lncRNA downstream 145302 525587 ~ 525889 (-) True G152557
TU173282 lncRNA downstream 145954 524840 ~ 525237 (-) True G152556
TU172233 lncRNA downstream 322294 341511 ~ 348897 (-) True G151624
TU172219 lncRNA downstream 344564 318517 ~ 326627 (-) True G151612
TU173515 lncRNA upstream 401761 1078258 ~ 1081280 (-) True G152759
TU173532 lncRNA upstream 500272 1187612 ~ 1189153 (-) True G152776
TU173477 lncRNA upstream 677039 1354901 ~ 1355173 (-) True G152721
TU173686 lncRNA upstream 763012 1439509 ~ 1439718 (-) True G152918
TU173702 lncRNA upstream 778295 1454792 ~ 1455019 (-) True G152933
CI01000029_00653876_00662303.mRNA mRNA downstream 8317 653614 ~ 662874 (-) True CI01000029_00653876_00662303
CI01000029_00553198_00596492.mRNA mRNA downstream 74699 552681 ~ 596492 (-) True CI01000029_00553198_00596492
CI01000029_00532933_00536043.mRNA mRNA downstream 134433 532645 ~ 536758 (-) True CI01000029_00532933_00536043
CI01000029_00520844_00524249.mRNA mRNA downstream 146849 519834 ~ 524342 (-) True CI01000029_00520844_00524249
CI01000029_00400646_00402700.mRNA mRNA downstream 267482 400319 ~ 403709 (-) True CI01000029_00400646_00402700
CI01000029_00740836_00741866.mRNA mRNA upstream 63937 740434 ~ 741866 (-) True CI01000029_00740836_00741866
CI01000029_00743128_00743689.mRNA mRNA upstream 66605 743102 ~ 743689 (-) True CI01000029_00743128_00743689
CI01000029_00744455_00749027.mRNA mRNA upstream 67787 744284 ~ 749027 (-) True CI01000029_00744455_00749027
CI01000029_00765372_00789010.mRNA mRNA upstream 88756 765253 ~ 789010 (-) True CI01000029_00765372_00789010
CI01000029_00805246_00806809.mRNA mRNA upstream 128416 804913 ~ 806809 (-) True CI01000029_00805246_00806809
TU173481 other upstream 615752 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 1915669 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 2572280 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 3029726 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 3783846 4472400 ~ 4477212 (-) True G154201

Expression Profile