RNA id: CI01000029_00994197_01001813.mRNA


Basic Information

Item Value
RNA id CI01000029_00994197_01001813.mRNA
length 2526
RNA type mRNA
GC content 0.42
exon number 3
gene id CI01000029_00994197_01001813
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 992790 ~ 1001813 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGATCACACTTTCTCTGAGAATACCTCAGCCCATGAGAACTTCACAGATGACTGGACATCAGATGGAGGGGAAACGGTACATTTTATCATTCGATGCGTTATCCCGTCGGTCTATATACTTATCATAACGGTTGGTTTACTGGGCAACATCACTCTTGTGAAAATATTCATCACTACCAGCGCGATGCGAAGTGTACCAAACATTTTCATCTCCAGCCTGGCTGTGGGAGATGTTTTGCTTTTGGTCACTTGTGTACCAGTGGACGCGTTTAGGTATTTCTATGAAGAGTGGATTTTTGGAACTGTGGCTTGTAAGATGATCCCGGTGATCCAGCTCACCTCGGTTGGAGTCTCCGTGTTCACTCTCACGGCACTCAGCGCAGACAGACACAAAGCTATTGTGAATCCCATGGACATCCAGACCTCCAGCGCAGTGTTCTGGACCTGTTTGAAGGCCATCACTATATGGGTTGTCTCTGTACTGCTGGCTATCCCTGAGGCGGTGTTTTCACAGGTGGTTCATATGCCAGACAAGAACACGACGTTCACCGCTTGTGTGCCGTATCCACTCTCCAACGAGATGCATCCCAAGATTCACTCGATTATGATATTCCTCGTCTACTTCCTCATCCCTCTGAGCATTATCTCTGTTTACTACTACCACATCGCGAAGACGCTTATCAAGAGTGCTCATGATATGCCAGGTGAGATTAGTGAGCACTCCAAAAGACAGACGGAGACGAGGAAGCGTCTAGCCAAGATCGTTCTGGTGTTCGTGGGCCTCTTCGCGCTGTGCTGGTTTCCCAACCACGTTCTCTACATGTACCGCTCCTTCAACTATCGGCAGATCGACTCTTCGCTGTCACACCTCATCATCACGCTTGTGGCACGAGTGTTGAGTTTCTCCAGCTCCTGCATGAACCCATTTGCCCTGTACTTGCTGAGCGAGAGCTTCCGAAGGCATTTCAACAACCAGCTGCTGTGCAGGCAGCGCAAATACCAAGAGCGCAACACCAGCTACCTCCAGAGCACTTCTGCTATCCGCATGACCTCCATCAGGAAGAGCACACCTGCCGTGGCCAACGGGCATGGCCAAAAACCAGGAGTCTGCATTTAGCATCTGTTCTCTGAACAGATCAAAACCTGATCTTAAGGGTTGGTGACTCACATTTAGGTTCGACTGAAGTGTTTGGTGACCCAGCTGGGTAAATGGGCAGTTATTGAAGCAGAGAATACAGAATTACTGTTGTAAATATTGCATGTATGTTTTTTTTCCAACGGTTGCAGCGTCGCTTGAGCCCCAGAATGAAATTTGCTTTGAAACATTATTCTTATTGCAAACAGAAAGGAATGGATATCCCACTGATAACTGAAGACTAATTCTATTTCTCCTCAAGCAAAATACAATTTCTGGCTGTATAAAATATCAGATCTGTACAAAAGATTGGACTAAAGTTATTATTCCATTATTGTATAATGGCAAGTTTGCTTTTCAGCTCAATCAATTTTCCTTTTTCATCCAGACGAATGATGAAAATTCGACTGTAATCGATGGAAAGTGCACTTAATACAGTAAATGAATGTTTGGTAAAGCAGTTTTGATTTCACCAGGAGGACAACCGTATTACAAAGATATCACTGAAATCATTTACATTGCCTATGATCACATTCTATTTCTCATACATAGACAATATATTCACAATATATTCAATTTAGGAGTAACGGGAGCATAGACATGGCTCTTTCCAGTGAATGTTAATGTCTACTATGATAGATCAGACAGGTCACACACTCAAGGGTAAACTGTGGTGATTAGATTAATATATGCATAACCAGATTAGGATTCAACATGAATATAAATTTCTCAGACACGTTCCCCTGTACCTTCCGATATATGAGTCATAGGAACGCCAAGATCATTATGGCAGACTAATGTCAATAACGCATGCTGTGTATCATTCTTAGATTCACCAGCAAATGTTATCCTCTTAATCACTGCATTGCAGTATATCATCTTTAAATCATTTTTGTTTGGAGTGATTTGTGTCCACATCTAATGGAGTAGAACAATCATACAGGTGGAAATATTACCTATAATCTGTAGTGACTGTCATCAGGAATCCGGACTGAAAAAGGCAGTCACGTTTAAGCCTTTGATGAGGTCCCAAACCTGCAAAAATGTGTTCAGTGAGCTTTTTGTGATCTTGTGCCACTTACACACACACATTTTACTGCTCACAATTTCATTCAAACCTTCAAATTATATATCATTGTTCATCATAATAGGCCTACATTTTGGTCTCTCTTACTGAACAAGTCAAATGACATTTTAAAGAATTTTAATTAACTTTTCTTCAAAACGATGAAATCCATTTTAATGGAAAATGTAATTAGTGATAACTAATTACAATAATTTGTCCTCTCTTCAGTCCTCTCAACACAGAATCTTTGACCTAAAGCAATGCGTTTTAATTATGCTGAAAATTAACGTGACTTGCCCGAGACTTGACTTATGTCAAATAAA

Function

GO:

id name namespace
GO:0008528 G protein-coupled peptide receptor activity molecular_function

KEGG:

id description
K04168 NMBR; neuromedin B receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173275 lncRNA downstream 341022 649876 ~ 651768 (-) True G152551
TU173283 lncRNA downstream 466901 525587 ~ 525889 (-) True G152557
TU173282 lncRNA downstream 467553 524840 ~ 525237 (-) True G152556
TU172233 lncRNA downstream 643893 341511 ~ 348897 (-) True G151624
TU172219 lncRNA downstream 666163 318517 ~ 326627 (-) True G151612
TU173515 lncRNA upstream 76445 1078258 ~ 1081280 (-) True G152759
TU173532 lncRNA upstream 174956 1187612 ~ 1189153 (-) True G152776
TU173477 lncRNA upstream 351723 1354901 ~ 1355173 (-) True G152721
TU173686 lncRNA upstream 437696 1439509 ~ 1439718 (-) True G152918
TU173702 lncRNA upstream 452979 1454792 ~ 1455019 (-) True G152933
CI01000029_00805246_00806809.mRNA mRNA downstream 185981 804913 ~ 806809 (-) True CI01000029_00805246_00806809
CI01000029_00765372_00789010.mRNA mRNA downstream 203780 765253 ~ 789010 (-) True CI01000029_00765372_00789010
CI01000029_00744455_00749027.mRNA mRNA downstream 243763 744284 ~ 749027 (-) True CI01000029_00744455_00749027
CI01000029_00743128_00743689.mRNA mRNA downstream 249101 743102 ~ 743689 (-) True CI01000029_00743128_00743689
CI01000029_00740836_00741866.mRNA mRNA downstream 250924 740434 ~ 741866 (-) True CI01000029_00740836_00741866
CI01000029_01109371_01118517.mRNA mRNA upstream 107160 1108973 ~ 1119564 (-) True CI01000029_01109371_01118517
CI01000029_01123207_01149937.mRNA mRNA upstream 121120 1122933 ~ 1150937 (-) True CI01000029_01123207_01149937
CI01000029_01186343_01189865.mRNA mRNA upstream 183874 1185687 ~ 1190647 (-) False CI01000029_01186343_01189865
CI01000029_01198414_01198698.mRNA mRNA upstream 196532 1198345 ~ 1199494 (-) True CI01000029_01198414_01198698
CI01000029_01245770_01245984.mRNA mRNA upstream 243705 1245518 ~ 1245984 (-) True CI01000029_01245770_01245984
TU173481 other upstream 290436 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 1590353 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 2246964 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 2704410 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 3458530 4472400 ~ 4477212 (-) True G154201

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035965 True 1886 mRNA 0.45 3 NC_007131.7 37265356 ~ 37287107 (-)