RNA id: CI01000029_01123207_01149937.mRNA


Basic Information

Item Value
RNA id CI01000029_01123207_01149937.mRNA
length 3521
RNA type mRNA
GC content 0.48
exon number 16
gene id CI01000029_01123207_01149937
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 1122933 ~ 1150937 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGATCAAAGGTAGAAGAAACGTTGCTAAAATGTACAGCTGCCGTCATTAGAAACCGCAGATGAGCAACTAGAGGGCGAATGCATCAGGGTCTGATCGAAACAGCATGGCCAGGTTTTCATAATGAATGCTTAGGCTTTCATTCAAACCTACTCTAGCTGTGCCTTGTGACGCAAATGTCACTGATCCGAGTGCCAGAAGAGTGTGGAGGTGTGTGGATGGAGGTTGGACAGAACCTGACTGCGTCCCCTCTCTGTGTCTGTGGCCTAGGCTCCGACTGGGCTAAGCTCTCCATACCGTCTGTTCGGTCCTGGCCAATGCCAGATCTGTAGCAAACAGTGAGACCTGGATACCCAACCTGAGCCAAATGGGCAAGCTCTCAGTGACTCACACTTCAGTGAGAGAGAGAAGGTGAAAAAAGATGGGATCCAATGTTGACATTCAAAATCATGATTTGTTTTTAACATTAATGTGATCTCCGGACCAGATGATTGTATAGTTATTTATGCTGTGTATGGCTTGAAATACATAATGCGAGCAGCAGAGAGTGGGTAGGAAGTTCAGTCATGCTGACCCCTTGGCTTATAGCATGTTTATGTAGATTTCAGTGTTTGAACGTGTACTGTGTACTGCCGGCAGCATTTTTTTTGTGTCTGTATGTGTTTGTGTGCATCATACTGTATGTGTGTGTGCAGGCATTGCAATGGCCAGGCCCAGTGTGTGGGCTGAACTCAGGAAGTGGGCAGGCAGGCATGTGGCCCTCCGCCACTTGGGCCCCAGGGTTCCTATCACAGATGGCCCACTGACATTAGCCCAGGCCTGGGGTCAGCTAAGACATCATATGGAGAGAAAGAGAGAGCGAGTCTCATGACATTCTCAGCTCGAAAGGATGAAAAGGCAACAGCGTGAGACTCTCAGATGAAAGACGCACAAAGACACTTTACCTTTGCTCAGGTGAGGCGGCTTGCAGGCTCGGCGAATTTGAGCAAGGTTTTGAGAAATGGAGAGCGGAGATGCAGAGCTGAGAGAGATGCTTGAGAACAGCCAGGAAAATGGTGGGTTTATTCCATGGGATCACAGACACAGATATACAAGATCCCTGTGCCCTAGGGAGACAGTGTGTGACACATCCTATGGGAATCATACAGAGCTTTCAGAACAGGGTAGAATCAGATTAATGGAGAAAGAGAGAGGTTATTCTAATGGAACCCACCTGAATCTTCAAGCACTAAAGAGAAGAGAGCAGCTGACGTTTATTCAGCCTACTGACGCGCTGACACCGAGGCAAGCTGCCCAGGTTGGAAGTAAAAACATGCGTCCTTGGAGAAAATGGGTATCAGTTTTTGGCTTTACTGTTGGACTGTATTTATATAGCAGTTTGCTGAAGCCAGTCATTGGTTGCATCAGTCAGGATGTGGCCTTAAAGAATGAAACCTCAGCTGCCATTAGTGCCGCTTTTGGAGTTACACGTTCCTGCACGCAGAGAACTGAAAAAAGGATTTCGTGTCTGTCAGGTGCTGATAGACAAGACTTTGCTTTTAGAATTACTCACACACTCAATGTTGTCTTGAAAGTTATTCAAAAAATGTTTAAAAGTAAATTTAATCGTATGAGGCACATAGCTGTGACAGTTCCACCCTCAGCACTTGAGCCAGACACCAAAGACTCTTTGTCTCTGTCAGATTCCTGGAAGAAACTCTTTGTCTTGAAGAAGGGCTTTCAGCAGCGGCACAGCCTCCTTGACGCTGATGTTGGTTTAAAAACAGCTCAGTGCAGACACAGCAGAGTGGATATCAAAGGCCAGAGAATGGCATGTTACAGAGAAAATGAGTGGAAACTGGACAGACGGGGCCTGGATGTATTTTACAGACTGACTCAGACACCAGCTCAGCGCCAGCTTCTTGACTTGTATAACAGTGCGGAGATTGGAACAGATAGAGCGAGCTTGACTCACGGTGCTATCATGGAGAATCTGCTCTTGTTTTTCTTTAGTAGAAGAAGGAGAGAGAAGAACAGAAGGACAAGTGGGCGGACTTGCCTTACACGGCAAAAGACAGCTGAACCCAGTGACCTTGGTGTGGTCCTTGAGGAGAGGTTCTTCTTCGGCCCTCGGCCAGCGTGGATGCCGGGATGGGGTGTTCTACAAATGGGTTCCTCTAGCCGTTGTCTTGGTGTGCTTGTTACGGGGAGGATTCTCTTGGCAGTGGATGGACTCGCGCTGACGCTGGCACGGGTCCTTCGCCACGGCCCCCCTCTTATCCGAAAAGAGTGTGCTGCTTGTGAAAGGGGTGACGGGGATGGTAACCGGTTCACTCATCCCCCAATGACCCCAAATCCTGTCTCCCAATGCGCTGATTACAGAGCGAAAGCCCAGCTCTTCTACACCTGCTGGATTGAGGAGACTAAGCTAAAGGAGGGAGCTGTCACCTTTGTTGGTTGTGTCATTTGTCAAATGTACTTTCCAGTTTCCTTCCATAAATTTTTAAGTCGGCCCATTAAATATAAGCTGGGCTTCATTAAACAGACTTCCTCAAGTAAAAAGAGTCTCGGTTTTGGAAAGGATGGCGTCATGCACTCATCATTGCCCCATCACAGCACATCTCCGTGTGGTCTGCATAATCTCAGCACCCTGGCCAGGGGATCTTACTTGTCACCTCACTGCCCAGCCTTCGCCTGCCTAACCCGACTACCACAGAGGACGCAGTGTGAGGCCTTTACCCTGAGAAACAAGCAGATCCCAAACTTACAGAGAACCTTTGGTCCGCAAGGCGGGCATGTTTTTAAACACCGCCTCCAGGAATGTGTCATAAATCCATCTAATGACCTATACATGGTGCTGATGATCTTTACTCCATTTACTTCCATGTCGTTTTCCTGCATTGCACCAGTCCACAAATATGCAGCTCTTGTTTTGGGAGCGGGTTATTCACAGAGAATGTTTTCATCTGTGCCGTTTTCAATTATCGAGCTATCCTGTAATTACGTTGCTTTGCCCCATATTGGTGTGCCTCAGAGTCCCGGGCCAGACCTCTATCCCAGACCGGGGTACATTTTTCCTTCCAGGACCCCCCTTTCTCTACTGGACGGTCTGGTCACTAATTTGATTGAACTCCCCTATGCTGACCATCTGGACATGATTTTAGCAGGCCTGTGTCTCTGCGCTGGCCTCTCACCCGGCTGCATGTGGAGTTGGATGAGTCGCCTGCCCAAGATTCAACTTTGGAGTCTTAATGAGGAGTCAGTATGACACTCCAGGGGGCTGACTCACACACATTTTGGGTGATACATCCTCTGGTCCTGCTAACACAGACCAAAATCACACCGTAAAAGTTGCTGGATGAGCAAAAGGTGAATCTTGCGGAGAGCTGAGATAAACTGCAAAGACAAAAGTTCTGTGCGAGTGAAGGAAAAGGTAATGTGAGGATAGCATTAGTGGGCCATAATTCAGGATTGTCTCAGAAATTTCCTTTATGTGAGCAAACGGACGGTGGGTTTTTTTCAGTTATAGGAAGTTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173515 lncRNA downstream 41653 1078258 ~ 1081280 (-) True G152759
TU173275 lncRNA downstream 471165 649876 ~ 651768 (-) True G152551
TU173283 lncRNA downstream 597044 525587 ~ 525889 (-) True G152557
TU173282 lncRNA downstream 597696 524840 ~ 525237 (-) True G152556
TU172233 lncRNA downstream 774036 341511 ~ 348897 (-) True G151624
TU173532 lncRNA upstream 25832 1187612 ~ 1189153 (-) True G152776
TU173477 lncRNA upstream 202599 1354901 ~ 1355173 (-) True G152721
TU173686 lncRNA upstream 288572 1439509 ~ 1439718 (-) True G152918
TU173702 lncRNA upstream 303855 1454792 ~ 1455019 (-) True G152933
TU173704 lncRNA upstream 306028 1456965 ~ 1457196 (-) True G152935
CI01000029_01109371_01118517.mRNA mRNA downstream 3369 1108973 ~ 1119564 (-) True CI01000029_01109371_01118517
CI01000029_00994197_01001813.mRNA mRNA downstream 121120 992790 ~ 1001813 (-) True CI01000029_00994197_01001813
CI01000029_00805246_00806809.mRNA mRNA downstream 316124 804913 ~ 806809 (-) True CI01000029_00805246_00806809
CI01000029_00765372_00789010.mRNA mRNA downstream 333923 765253 ~ 789010 (-) True CI01000029_00765372_00789010
CI01000029_00744455_00749027.mRNA mRNA downstream 373906 744284 ~ 749027 (-) True CI01000029_00744455_00749027
CI01000029_01186343_01189865.mRNA mRNA upstream 34750 1185687 ~ 1190647 (-) False CI01000029_01186343_01189865
CI01000029_01198414_01198698.mRNA mRNA upstream 47408 1198345 ~ 1199494 (-) True CI01000029_01198414_01198698
CI01000029_01245770_01245984.mRNA mRNA upstream 94581 1245518 ~ 1245984 (-) True CI01000029_01245770_01245984
CI01000029_01252971_01257256.mRNA mRNA upstream 101862 1252799 ~ 1257256 (-) True CI01000029_01252971_01257256
CI01000029_01293143_01293964.mRNA mRNA upstream 141607 1292544 ~ 1294046 (-) False CI01000029_01293143_01293964
TU173481 other upstream 141312 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 1441229 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 2097840 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 2555286 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 3309406 4472400 ~ 4477212 (-) True G154201

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU206601 True 220 lncRNA 0.41 1 NC_053126.1 6359069 ~ 6359288 (-)
striped catfish (Pangasianodon hypophthalmus) TU206601 True 1941 lncRNA 0.41 2 NC_047605.1 2082606 ~ 2084603 (+)
tiger barb (Puntius tetrazona) TU206601 True 259 lncRNA 0.44 1 NC_056718.1 19115118 ~ 19115376 (+)