RNA id: CI01000029_01293143_01293964.mRNA


Basic Information

Item Value
RNA id CI01000029_01293143_01293964.mRNA
length 1044
RNA type mRNA
GC content 0.40
exon number 3
gene id CI01000029_01293143_01293964
representative False

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 1292249 ~ 1294123 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGCCTCGTAATTTGCTTTAATTTTCTATCTAGTTTAGTGGACGTAAATCTTCATTGTGCGCGTGCTCTCCTGCACCTGCCATGTCACTTTTCAATGCGACAAGTAACTTTACTCGAAGTGATGCTCCAGCTTTACGGTTGTTTCGAAAGAGTGAGAGCTCTGATGATGATGAGAAAAGGTTGAAAAGAAGAGAAAAGAACCGAGTTGCTGCCCAGAGAAGCCGCAAAAGACAAACCCAGAGAGCTGACGAGTTGCACGAGGCGTATGAGTGTCTGGAACAGGAGAACAGCCTGCTGAGGAAGGAAGTCCAGCTTTTGATAGAGGAACAGCAACGCTTAACAGATGCCCTCAAAGCCCATGAGCCTTTGTGCCCTGTCTTGAACTGTGGTATGACCTCAACAACAAGGTCCACAGGCACAGTGCCACAAGACATTCACATCTGATGCTCATGATGTCGGAATTTCCATTTAAGGATAAATTAAGCTAATTATCTTTAATACAAGTGATTCGTGCATACTAGCGGCATGCAGTTTTTATGCTTTTTATTCTAAAGTATTAACCCGTGAGTTCAGTATCCGTTAACATGCAGTTGAATTAATTATTCATGCTCGAACTTTCTCTTTTGCGTTTTTGACAGGTTTCGTTCAGAATACAGAATCTCTAGTCATATGTTACTTTTCCCAGGGCCATGCCTCACGTGAATACTTCCACTTTTGGTATTTACTGAGATAGAGTAAATAACCACTAACTAAACCATCTGTTATACCACAGTTAGTGGACTGTGAATGAACAACATGCGAGAATGGACTTCTGCTTTATGAGAGCCTATCCGACCAAAATACTAAAGGTTAGTTTCAAAACTCTGTTACAGCCGCTTTGTTATGGCTGCACTATTACAAATAACCACAAATGGCAGTGTTACTATTCTGTCTTGCTTGGTCATGTTTTGCTGTGGGTATGTATTGTAAGTAGAAGAATAATTTTATTTTAATAAAAAGGAATTACTCTGTTTATACACTCTGTGACGCAGATGCAGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173532 lncRNA downstream 103391 1187612 ~ 1189153 (-) True G152776
TU173515 lncRNA downstream 211264 1078258 ~ 1081280 (-) True G152759
TU173275 lncRNA downstream 640776 649876 ~ 651768 (-) True G152551
TU173283 lncRNA downstream 766655 525587 ~ 525889 (-) True G152557
TU173282 lncRNA downstream 767307 524840 ~ 525237 (-) True G152556
TU173477 lncRNA upstream 59490 1354901 ~ 1355173 (-) True G152721
TU173686 lncRNA upstream 145463 1439509 ~ 1439718 (-) True G152918
TU173702 lncRNA upstream 160746 1454792 ~ 1455019 (-) True G152933
TU173704 lncRNA upstream 162919 1456965 ~ 1457196 (-) True G152935
TU173708 lncRNA upstream 171121 1465167 ~ 1465472 (-) True G152939
CI01000029_01252971_01257256.mRNA mRNA downstream 35288 1252799 ~ 1257256 (-) True CI01000029_01252971_01257256
CI01000029_01245770_01245984.mRNA mRNA downstream 46560 1245518 ~ 1245984 (-) True CI01000029_01245770_01245984
CI01000029_01198414_01198698.mRNA mRNA downstream 93050 1198345 ~ 1199494 (-) True CI01000029_01198414_01198698
CI01000029_01186343_01189865.mRNA mRNA downstream 101897 1185687 ~ 1190647 (-) False CI01000029_01186343_01189865
CI01000029_01123207_01149937.mRNA mRNA downstream 141607 1122933 ~ 1150937 (-) True CI01000029_01123207_01149937
CI01000029_01294841_01297423.mRNA mRNA upstream 678 1294724 ~ 1297423 (-) True CI01000029_01294841_01297423
CI01000029_01353955_01354599.mRNA mRNA upstream 59782 1353828 ~ 1354599 (-) False CI01000029_01353955_01354599
CI01000029_01576996_01590356.mRNA mRNA upstream 282293 1576339 ~ 1592127 (-) True CI01000029_01576996_01590356
CI01000029_01600901_01604213.mRNA mRNA upstream 306686 1600732 ~ 1605205 (-) True CI01000029_01600901_01604213
CI01000029_01645824_01650080.mRNA mRNA upstream 351669 1645715 ~ 1650080 (-) True CI01000029_01645824_01650080
TU173923 other upstream 1298120 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 1954731 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 2412177 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 3166297 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 3692062 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035975 True 716 mRNA 0.42 3 NC_007131.7 37812699 ~ 37813863 (-)
tiger barb (Puntius tetrazona) TU206720 False 1048 TUCP 0.41 3 NC_056718.1 19254810 ~ 19256255 (-)