RNA id: CI01000029_01758347_01773935.mRNA


Basic Information

Item Value
RNA id CI01000029_01758347_01773935.mRNA
length 1179
RNA type mRNA
GC content 0.48
exon number 9
gene id CI01000029_01758347_01773935
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 1758311 ~ 1773935 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAACTTCACTTTGGACTTCAAAGCAGGGATGGGAGACTCGAGTTCAATGGAGAACTTAGAGAAGCAGCTCATTTGCCCCATCTGTCTGGAGATATTCACTAAGCCTGTGGTCATCTTACCCTGCCAGCACAACCTCTGTAGGAAGTGTGCCAATGATGTTTACCAGGCCTCTAACTCTTTTTGGCAAAACCGGGGCTCTACCACTGTGTCTACAGGGGGACGTTTCCGCTGCCCATCTTGTCGCCATGAAGTGATATTGGACCGGCATGGTGTATATGGCCTTCAGAGGAACCTGCTAGTGGAGAATATCATTGATATATACAAATCTGAGACTAACAGGCCACTCCTGCCCAAAACAGAGCAACAGCAGCTGATGTGTGACCAGCATGAGGAGGAGAAGATCAACATCTACTGCCTCACCTGTGAGACACCGACATGCTCCATGTGCAAGGTGTTCGGGGATCACAAGGACTGTGATGTGGCCCCGCTGACAGTCATTTACAAGAGACAGAAGAAAAGCCTGTGCATGGTGGACACCATATGTCAATCTGTTATCTGCAGTGTTCCTATGCTGAAGACAGAGCTAAGTGATGCCATAGCCGTCTTGGTGGCAGGAAATGACAGAATACAGGCCCTGATCTCACAGATGGAGAATATTTGTAGGACTGTCAAGGAAAATGGTCGGCAACAGATGCAGAACATCTCTGATAAGTTTGATGAACTTTTTGCCATCATAGAAGAGCGTAAAAGGGAACTAATAGAGACTGTCGGCCGTGAGCAGGACCGAAAACTGGGCCACGTCCGCTCCCTTATGCGTCGCCACGGAGACTACTTAGAGATGTCCATCAAACTGGTGGAAACAGCCATCCAGTCCATGGAGGAACCTCAGATGGCTGTGTTTCTGCAGAGTGCAAAGGAAGTGTTCAAGAAGATCACAGACACTGCCAAGGCCTCCAACATTGAGCAGACGGAGGCAGGCTTTGAGAGCATGGACCACTTCATCATCAACACGGAGAATGTGGCCGACATGCTGAGAGGCATTGACTTCCAAACAGGTGAAGATAGAGAAGACAGCAGTGAAGAAGCTTCTGAAGACCTGACCAACTCACCTGGTCAGAGTGGTGAATCAGGGAGACTCTAACTTATTTTGAAACCCAAGGTTAGTTTTAAAAATGAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10653 TRIM54, MURF3; tripartite motif-containing protein 54

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173531 lncRNA downstream 98806 1658989 ~ 1659505 (-) True G152775
TU173758 lncRNA downstream 138017 1619702 ~ 1620294 (-) True G152989
TU173734 lncRNA downstream 230707 1526723 ~ 1527604 (-) True G152965
TU173733 lncRNA downstream 233285 1524813 ~ 1525026 (-) True G152964
TU173708 lncRNA downstream 292839 1465167 ~ 1465472 (-) True G152939
TU173498 lncRNA upstream 63161 1837096 ~ 1851027 (-) True G152742
TU173504 lncRNA upstream 79146 1853081 ~ 1853608 (-) True G152748
TU173864 lncRNA upstream 161006 1934941 ~ 1937564 (-) False G153085
TU173865 lncRNA upstream 162237 1936172 ~ 1937564 (-) True G153085
TU173882 lncRNA upstream 306137 2080072 ~ 2080284 (-) True G153102
CI01000029_01750119_01750442.mRNA mRNA downstream 7610 1749858 ~ 1750701 (-) True CI01000029_01750119_01750442
CI01000029_01688033_01695159.mRNA mRNA downstream 63078 1687857 ~ 1695233 (-) True CI01000029_01688033_01695159
CI01000029_01645824_01650080.mRNA mRNA downstream 108231 1645715 ~ 1650080 (-) True CI01000029_01645824_01650080
CI01000029_01600901_01604213.mRNA mRNA downstream 153106 1600732 ~ 1605205 (-) True CI01000029_01600901_01604213
CI01000029_01576996_01590356.mRNA mRNA downstream 166184 1576339 ~ 1592127 (-) True CI01000029_01576996_01590356
CI01000029_01783528_01785599.mRNA mRNA upstream 9528 1783463 ~ 1785599 (-) True CI01000029_01783528_01785599
CI01000029_01788875_01811689.mRNA mRNA upstream 14854 1788789 ~ 1811689 (-) True CI01000029_01788875_01811689
CI01000029_01812895_01814632.mRNA mRNA upstream 38870 1812805 ~ 1814632 (-) True CI01000029_01812895_01814632
CI01000029_01943164_01970772.mRNA mRNA upstream 168710 1942645 ~ 1971005 (-) True CI01000029_01943164_01970772
CI01000029_02029449_02036156.mRNA mRNA upstream 255491 2029426 ~ 2036156 (-) True CI01000029_02029449_02036156
TU173481 other downstream 464188 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 818231 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 1474842 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 1932288 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 2686408 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 3212173 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035995 False 1522 mRNA 0.47 9 NC_007131.7 38730291 ~ 38758797 (-)