RNA id: CI01000029_01943164_01970772.mRNA


Basic Information

Item Value
RNA id CI01000029_01943164_01970772.mRNA
length 1427
RNA type mRNA
GC content 0.51
exon number 5
gene id CI01000029_01943164_01970772
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 1942645 ~ 1971005 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCGAGCATTCATAAAGAGAGGCAGTGATGTCACTGCATGGAGTGAAAGAGAGGAGAGGTGGGGGCTCCTGCTCCGCTTGCCGCCTGCTGAACGTACACACAAACACACACTATTTGAGAGTTACAGCAGGCTGTTCAGAGCAAGAAAGCAGCACATCCAAGCACTCAGACGCGCTGCTCACACATACTCTTGTCAGGGGCCGGTCATCCCTTCACTCTGAGTGAGCCCAGCATGCCCTCCAGGAGCGTGGACTGTAATATCTCCACCCTCATCGCCTGTGCGGTGGACGTGGAGGTGTTCACCAGTCGGGAGGTCAAGCTGTCATCTCTGGGGATGTTCACTCTTGGCACTGAGATGAAGGAATATGCTGGAGGTTTCTCACAGATTGTGACAGGATACAAGGAAATGTTCGAGGCGCTCTTCCTTGCGTACGATGAGGGTGTGACGTTCCAGCAGTTTAAGAGCTTCCGACGCGTACGAATCAATTTCAGTAACCCCAAAGCAGCAGCCAGCGCTAGAATAGAGCTGCACGAGACACCTTTCAGAGGAAAGAAACTTAAACTCTACTTTGCCCAGGTGCAGAACCCAGCATCCGAAGGAGACAATTTGCACCTGGCTCCTCCCCAGCCTTCGAAACAGTTCCTCATCTCCCCTCCTGGCTCACCTCCAGTCGGCTGGCAACAGATTGACGAGGCCAAACCGGTTATTAACTACGACCTGCTGTATGCAGTTGCCAAGCTTGGTCCAGGTGAGAAGTTTGAGCTACATGCAGGCACAGAGTCTACGCCCAGCGTGGTGGTCCACGTCTGTGACAGTGACACGGATGAGGAGGAGGAGGAATCAAAGAACAACCCTAAACCAAAAATCATCCAGACCCGACGCCCAGACCTGCCAGTCTCGCACTGAACTCTACAGCTCCACAGAGAGTCAGGAGGATTTGACCCCTCCACCATCTCCTTCACAGGACCTCTGCCACCCTCCTTCAGAACCTTGTTAAACACACAACCAGGGTCTGAGGGACTCTGATCTGTGATTCTCGTTCAGCACACACATGTATACAATCCTCAATGTGCTGTCACACAATATTTTTTTTTTTTATGTTGGCAATACTCTGTGTTAAATATGGCTGCTCTCTGTCCCTCTTCCCCGATCTGACTCTGTTGTAATGTCATCTGATCACCAGTTAGAGGCAGCATGTACCTGTCCCTGCTCTCACCTATGTCTCTGATTGGCTACTGGGCCGTGGCACATGATAGTGTCAGATGTGCCTATTGGCTAATAGCTGGCCATTTGGCTTTGCTCTTGCACAGCAACTATGTACCATTTGTACCCAGCAAGCCATTAATAATAATACATTCTTCATAAGGGCATGCCAGCCACTAAATGTGGCTAAACACCAGCGCTGCATGTGGCACCCTTAAAAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17903 RCAN2, ZAKI4; calcipressin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173864 lncRNA downstream 5081 1934941 ~ 1937564 (-) False G153085
TU173865 lncRNA downstream 5081 1936172 ~ 1937564 (-) True G153085
TU173504 lncRNA downstream 89037 1853081 ~ 1853608 (-) True G152748
TU173498 lncRNA downstream 91618 1837096 ~ 1851027 (-) True G152742
TU173531 lncRNA downstream 283140 1658989 ~ 1659505 (-) True G152775
TU173882 lncRNA upstream 109067 2080072 ~ 2080284 (-) True G153102
TU173885 lncRNA upstream 124830 2095835 ~ 2096082 (-) True G153105
TU173518 lncRNA upstream 142419 2113424 ~ 2114309 (-) True G152762
TU173919 lncRNA upstream 254712 2225717 ~ 2227563 (-) True G153134
TU173946 lncRNA upstream 472658 2443663 ~ 2444082 (-) True G153161
CI01000029_01812895_01814632.mRNA mRNA downstream 128013 1812805 ~ 1814632 (-) True CI01000029_01812895_01814632
CI01000029_01788875_01811689.mRNA mRNA downstream 130956 1788789 ~ 1811689 (-) True CI01000029_01788875_01811689
CI01000029_01783528_01785599.mRNA mRNA downstream 157046 1783463 ~ 1785599 (-) True CI01000029_01783528_01785599
CI01000029_01758347_01773935.mRNA mRNA downstream 168710 1758311 ~ 1773935 (-) True CI01000029_01758347_01773935
CI01000029_01750119_01750442.mRNA mRNA downstream 191944 1749858 ~ 1750701 (-) True CI01000029_01750119_01750442
CI01000029_02029449_02036156.mRNA mRNA upstream 58421 2029426 ~ 2036156 (-) True CI01000029_02029449_02036156
CI01000029_02054840_02058175.mRNA mRNA upstream 83488 2054493 ~ 2058386 (-) True CI01000029_02054840_02058175
CI01000029_02099152_02101364.mRNA mRNA upstream 128007 2099012 ~ 2102007 (-) True CI01000029_02099152_02101364
CI01000029_02107558_02110456.mRNA mRNA upstream 136325 2107330 ~ 2111349 (-) True CI01000029_02107558_02110456
CI01000029_02114824_02116942.mRNA mRNA upstream 143587 2114592 ~ 2119568 (-) True CI01000029_02114824_02116942
TU173481 other downstream 648522 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 621161 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 1277772 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 1735218 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 2489338 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 3015103 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036009 False 1335 mRNA 0.49 4 NC_007131.7 39055432 ~ 39103119 (-)