RNA id: CI01000029_02029449_02036156.mRNA


Basic Information

Item Value
RNA id CI01000029_02029449_02036156.mRNA
length 1577
RNA type mRNA
GC content 0.44
exon number 10
gene id CI01000029_02029449_02036156
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2029426 ~ 2036156 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCATATCAATCTATCTATATTAGTTCATCATTAGAAATCATCTACTTCTATAGGCGTACGCGTTCAACCACCAAAATCGATCAACTGAAGTGGACTGAACTGCTCAGTCAGCAGCGCAATATCCTACAAGTAGCAACACCTGTCGCAGTGGGAGGAGCTATCGAGATAAAGGGAGGGGCTAAATATACAGTAGGTGGGGTTATGTTATGGTGCGAGAAGATTGCGGGAGGGGTTAGTGTTGTAATAGGAGGGGCTAATGATACAGATAGTTTGTTTAGAGTGGGAGGGGTTAGCTGTGTCATGGCTCTGCTCATCAGAGATCACAATGAGGAAATCCGATCTGATACGTTACCAGTGTTATCAGATAAGTTAACGGGACTTTTTCCACACAGACTCATTATATGCGTTCCAGTCGAACATCATTGGACTCTAAGTTGCGATGGAATGGATTACTTTGATTTTGACGCTGCTGGGAAGAGACTGACATTTGTGACCTTAAATGAGGACTTCCGAGCTTTTTTCTCCTCCAAAGATGTTGATTTTGAACAAGCAGTGCAAGAACCTGTTCACAACACAGCTTCTATCAGCAAAGACATTTTCTTTAAGACCCATCCGACCTGTTTTGCCATGATCAAGGGCAGATTGACTCCGGGCAACACGGCAATGCTCTCCGCTCATCTCTGTGAAGAATTTAATGACCATTTGGAGAGACTTGGAAGTGAAGGATCTGGACAGCTACATGAGCTCATCAAGAGTGTCATGTATCCAGCAGTGATGAGTAACTTACTGGGCCGATATAACTCCCCCAGTAGCGCCCTATCCAGGCAGGTGTTCCTTGAGAAGTTCACAACATATGATGATGGATTTGAGTACGGCTCCCAACTCCCAGACATGTTCCTGAAGGAATGGGCAAACTCAAAGCAATGGCTCCTTTCTCTGCTAAGAAATATGGTTGCCAAAGCTGAGGAGACTCTCTACAGTGAGAGTTATGGAAAGACTTTACTACAGCACCTGGCTACTTCAGTACCTGACAAATATCTACCCAATTATGGTTTACTTTTGCTTTGGGCTTCCCTGGCAAATGCTATACCAATAACATTTTGGGCCATTGCTTTTATTTTGTCCAATCCTGCAGTGTATAAGATTGCAATGGATCAGATCAGCACTGCCCTCGGTGACCAAGACAAGGAGAAGACAAAGGTGACCCTAGATGACTTACAGCGGATGCCATATGTGAAGTGGTGTATCATGGAAGGCATTCGGCTGAGGGCCCCTGGAGCCATCACTCGTAAAGTAGTGCGACCTCTCAAATTACAGAATTATATTGTCCCACCTGGAGACATGCTGATGTTGTCTCCTTACTGGGCTCACCGAAACCCCAAGTATTTCCCAGACCCAGAAGATTTCAAACCTGAACGATGGGAAAAGGCAGATTTAGAAAAGAATGTCCATTTGGAAGGGTTTGTGGCATTTGGAGGGGGGAAAAATCAGTGCCCAGGAAGGTTAGAAAAACTCTTGTGTTTATATGAAATAATCTTTGTGTACACTTGAAAAAAATTATAACATTCAATAAA

Function

GO:

id name namespace
GO:0004497 monooxygenase activity molecular_function

KEGG:

id description
K07439 CYP39A1; 24-hydroxycholesterol 7alpha-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173864 lncRNA downstream 91862 1934941 ~ 1937564 (-) False G153085
TU173865 lncRNA downstream 91862 1936172 ~ 1937564 (-) True G153085
TU173504 lncRNA downstream 175818 1853081 ~ 1853608 (-) True G152748
TU173498 lncRNA downstream 178399 1837096 ~ 1851027 (-) True G152742
TU173531 lncRNA downstream 369921 1658989 ~ 1659505 (-) True G152775
TU173882 lncRNA upstream 43916 2080072 ~ 2080284 (-) True G153102
TU173885 lncRNA upstream 59679 2095835 ~ 2096082 (-) True G153105
TU173518 lncRNA upstream 77268 2113424 ~ 2114309 (-) True G152762
TU173919 lncRNA upstream 189561 2225717 ~ 2227563 (-) True G153134
TU173946 lncRNA upstream 407507 2443663 ~ 2444082 (-) True G153161
CI01000029_01943164_01970772.mRNA mRNA downstream 58421 1942645 ~ 1971005 (-) True CI01000029_01943164_01970772
CI01000029_01812895_01814632.mRNA mRNA downstream 214794 1812805 ~ 1814632 (-) True CI01000029_01812895_01814632
CI01000029_01788875_01811689.mRNA mRNA downstream 217737 1788789 ~ 1811689 (-) True CI01000029_01788875_01811689
CI01000029_01783528_01785599.mRNA mRNA downstream 243827 1783463 ~ 1785599 (-) True CI01000029_01783528_01785599
CI01000029_01758347_01773935.mRNA mRNA downstream 255491 1758311 ~ 1773935 (-) True CI01000029_01758347_01773935
CI01000029_02054840_02058175.mRNA mRNA upstream 18337 2054493 ~ 2058386 (-) True CI01000029_02054840_02058175
CI01000029_02099152_02101364.mRNA mRNA upstream 62856 2099012 ~ 2102007 (-) True CI01000029_02099152_02101364
CI01000029_02107558_02110456.mRNA mRNA upstream 71174 2107330 ~ 2111349 (-) True CI01000029_02107558_02110456
CI01000029_02114824_02116942.mRNA mRNA upstream 78436 2114592 ~ 2119568 (-) True CI01000029_02114824_02116942
CI01000029_02125408_02143865.mRNA mRNA upstream 89166 2125322 ~ 2143865 (-) True CI01000029_02125408_02143865
TU173481 other downstream 735303 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 556010 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 1212621 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 1670067 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 2424187 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 2949952 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036011 True 2274 mRNA 0.43 12 NC_007131.7 39190854 ~ 39219537 (-)