RNA id: CI01000029_02107558_02110456.mRNA


Basic Information

Item Value
RNA id CI01000029_02107558_02110456.mRNA
length 2159
RNA type mRNA
GC content 0.37
exon number 8
gene id CI01000029_02107558_02110456
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2107330 ~ 2111349 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTTAGGAATAGGCTAATCACACACACACACACACACACACGTGTATATATATATATATATATATATATATGATTAGCCTATTCTACCTTAATTGTGTGCGATTTTTCCACTTTGTACACCTAAAGAAATAGCGCAAAAGCCCTTCTGAAGTAAAAGGCGCCTTGTTGTTTAAAAATAAGAAATAATATTGAAACAACACTAACCTTTTTAATTAGCTTTCATTTTAATTTTAGTTTCATTTTTAGTCATTTTTATGTGATTGTTTTTATTTGGTTTAATTTATTGTTACTTTAGATTTAGTTCAGTTGTAGTTTTTCTTTATTTCCACTTAGTAATTTTAATGCTTCGACTTAAACTCATTTCATTTTACATTTTTTTTTCATCTAAAGTTTATATTTTATTTCAGCTTTATTTTGATTAACAAAAATGTTTTAATAGTTTGTTTTATTTAACAATAATTACCTATGTAATTCTATTGTTATATTATATCTTTATTTATCTATTTAGTATTAAATCATTTTATAACAATGTTCTAAGTGACTGAGTGACACTGGAGAACAAAATAAGGAAAATGAACGGAAGAAATAAACGAAAACGCGCACGCAATCAGTTTTGTCCCTCTACGGACACTGTAGCTCGACGTACGTTTGACGTCAACCGAACTGAGGAATTTGAAATAGGGGCGCGTTTTCCAGCATCTCTGAAGTTTATATCTAATGTAATTTGTTGTTGTTGTTTTCATTATCTATATGTGTCATATTATGCTTTACGATTTGTGGTTTGATTTTTTGTTTTTGTTCAATTGGTTGTGTATGGCGTAATTAAACTTGTGTGTAACGATTGTCGTTCGGATTGACAAAAATTTGATTATATTTTATTAATTTTAGACAAATGGAGGCCAACAAAGAATCACTTAGTGCCTTTAAGACGCCTTGCAAGCCTGCAAAAGTGAAAAGTCCAGTCAGTGCATGTGGAACCCCAGTCACCATTCCTGCCTCTCCCTTCATGAAGAAGCTCGGCTGTGGGACTGGAGTCAATGTCTATCTAATGAACAGGATGGGCAAGCAGACTCATTCGCCATGGGCCATTAAGAAGATCAACAGCAAGTGTGCAAAAAGTCAAAGGAATGTTTATCAGAAGCGTCTGTCCGAGGAGGCAAAGATCTTAAAAGACCTGCACCACCCTAATATTGTTGGCAAAGCTTTTACTACAGCAAAGGATGGCTCTAAGTGTTTAGCAATGGAGTACGGTGGAGAGCAGTCTCTGAATGACCTCATTGAGAAAAGGAGAGAAGAGGGTCTACAGGCATTTCCAGTGGCCACTATTGAAAAAGTGGCTCTTCACGTCGCACGTGGTTTACAGTACCTGCATAATGAGAAAAAGCTTTTGCATGGAGACATGAAATCATGCAATGTTGTCATCAAGGGCGACTTCGATAGCATCAAAATCTGTGATGTTGGTGTGTCACTGCCACTGGATGAAAACATGCAGGAGTGGATCTCAAAAAAAGAAGTGAGCGATCCAAAGGCCCATTATATTGGGACGGAGCCGTGGAAGCCTAAGGAAGCCTTGGAGGATGGGATTATCACAGACAAAGCTGATATATTTGCGTATGGACTCACGCTGTGGGAGATGATGACACTTTCTGTTCCTCACCTGGAGATGCTGGACACTGAGGGTGATGATGATGATAATGATGACTCCTTTGAGGATGATTTTGATGAAGATGCATATTACGAGAGGTTGGGAACTCGACCGCCTTTGGACGCAGCCACTCTCGGAGGGTCTTATCAGAGGATGGTGGAGCTCTTCTGTCTCTGTACAGAGGAAGACCCTCAGAAAAGACCCTCTGCAGCTCACATTGTTCAGGTGCTGGAATCCAACAACCAGCTTTGTGACAAAAACAGTGAGGTCATTATAATTGATTAAATTCACTATTCTCTTCCCGTCAATGTAAAATATATTGGAATGTTTACAGGTCGGGTCTGGTTTCTGCTCTGCTTTTCTGTCTATAATTTTACTTTGTGAGCTGTTTCTTTGTCACATTGTAAATATTTTTCTGTTGATGATTGTCATGTTACATATGTTCTTATGTACTCCATTGACTTTCAGACATGTTCTAGATACTGTAGTTGTTACGGTGCAATTTGAATTAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08865 PBK; PDZ-binding kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173885 lncRNA downstream 11248 2095835 ~ 2096082 (-) True G153105
TU173882 lncRNA downstream 27046 2080072 ~ 2080284 (-) True G153102
TU173864 lncRNA downstream 169766 1934941 ~ 1937564 (-) False G153085
TU173865 lncRNA downstream 169766 1936172 ~ 1937564 (-) True G153085
TU173504 lncRNA downstream 253722 1853081 ~ 1853608 (-) True G152748
TU173518 lncRNA upstream 2075 2113424 ~ 2114309 (-) True G152762
TU173919 lncRNA upstream 114368 2225717 ~ 2227563 (-) True G153134
TU173946 lncRNA upstream 332314 2443663 ~ 2444082 (-) True G153161
TU173947 lncRNA upstream 333802 2445151 ~ 2445890 (-) True G153162
TU173948 lncRNA upstream 335781 2447130 ~ 2447590 (-) True G153163
CI01000029_02099152_02101364.mRNA mRNA downstream 5323 2099012 ~ 2102007 (-) True CI01000029_02099152_02101364
CI01000029_02054840_02058175.mRNA mRNA downstream 48944 2054493 ~ 2058386 (-) True CI01000029_02054840_02058175
CI01000029_02029449_02036156.mRNA mRNA downstream 71174 2029426 ~ 2036156 (-) True CI01000029_02029449_02036156
CI01000029_01943164_01970772.mRNA mRNA downstream 136325 1942645 ~ 1971005 (-) True CI01000029_01943164_01970772
CI01000029_01812895_01814632.mRNA mRNA downstream 292698 1812805 ~ 1814632 (-) True CI01000029_01812895_01814632
CI01000029_02114824_02116942.mRNA mRNA upstream 3243 2114592 ~ 2119568 (-) True CI01000029_02114824_02116942
CI01000029_02125408_02143865.mRNA mRNA upstream 13973 2125322 ~ 2143865 (-) True CI01000029_02125408_02143865
CI01000029_02145528_02148347.mRNA mRNA upstream 33101 2144450 ~ 2149108 (-) True CI01000029_02145528_02148347
CI01000029_02159023_02164894.mRNA mRNA upstream 47488 2158837 ~ 2165128 (-) True CI01000029_02159023_02164894
CI01000029_02203122_02221481.mRNA mRNA upstream 91431 2202780 ~ 2221481 (-) True CI01000029_02203122_02221481
TU173481 other downstream 813207 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 480817 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 1137428 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 1594874 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 2348994 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 2874759 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036022 False 1958 mRNA 0.42 7 NC_007131.7 39359730 ~ 39368079 (-)