RNA id: CI01000029_02159023_02164894.mRNA


Basic Information

Item Value
RNA id CI01000029_02159023_02164894.mRNA
length 948
RNA type mRNA
GC content 0.50
exon number 3
gene id CI01000029_02159023_02164894
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2158837 ~ 2165128 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGAGGGATGAAGCCAAACAACCGGCAACCCTCCATTTGGAAGAGAGCGCTTAGTCTAACATGCAGCATGCAGAACTGCAAGCCTACACATATAGTTATTTCCATATGATCATGCAGTGCTTTGCTACCACTAGACCAGTCACTTGTTTTCTGTCAGACTGACTCAGACACTCTGTTTCAAATGCTGAGCGTTGATTTAAGGCCACACACACTCTGCCCTCTGTTGATGCTTCATGAGTCAACATGCAGGGCTCATGAGAAAGAGTGTCTCACAGACTTTATTTAGACCCTTGAAGAATGTCCGCCTCCCTCCCAGTCAATGCCACAAGTCTTTCTCCACATCCAGTATTCCCAAGGTGAATCATTCTCCAGCTCCGGGTCAAGACCCTCATAACGCCGTTTCCTCAGTCGGAATGGCCCATGCAGTTTTCTCTGTGAGAGAGAGGCCGATTGAGTCTCCAGCTGCCATCACACAAAAACATCTTCACAGGCGTGCGGCAGCAGCAACCATGTGGGAAAGACAGCGTGAGAGTGTCTGGGAGCTGTCGTGGACACCTCTCCCTCTACGTTTCTCCTGGTGTGAATGTAGCAAGATTCCTGCAGCTGATCGCGGCGGCTATTCTGATGACAGGTATTTTCCAGGGCTCGGACCCTCAGTCCAGGTTTTCCCCTGCAGGGTGTATAAAGATTTAGCAGACGTGTTGCTGATCTGGGGTCTGCGTATGGTCAGCTGGTGGCCCTCACTCAGCTTGATAAGATGAACTGAGCCTGCTGTTGTCACATTCTCCCCCAGATTCAACAGTGCTGTCTCGGGTGATAGCAGTAAGACCAGAGGGCCTCGGGTCAAGCATGTGCGCTACTGCTTTTCAACTGCTTGCACTGATAAGTCAAAGTGTCTGGACTTCCAAAACAATTACGGGGGGCCAGCCAATCGGACCTAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173518 lncRNA downstream 44528 2113424 ~ 2114309 (-) True G152762
TU173885 lncRNA downstream 62755 2095835 ~ 2096082 (-) True G153105
TU173882 lncRNA downstream 78553 2080072 ~ 2080284 (-) True G153102
TU173864 lncRNA downstream 221273 1934941 ~ 1937564 (-) False G153085
TU173919 lncRNA upstream 60589 2225717 ~ 2227563 (-) True G153134
TU173946 lncRNA upstream 278535 2443663 ~ 2444082 (-) True G153161
TU173947 lncRNA upstream 280023 2445151 ~ 2445890 (-) True G153162
TU173948 lncRNA upstream 282002 2447130 ~ 2447590 (-) True G153163
TU173949 lncRNA upstream 282487 2447615 ~ 2447842 (-) True G153164
CI01000029_02145528_02148347.mRNA mRNA downstream 9729 2144450 ~ 2149108 (-) True CI01000029_02145528_02148347
CI01000029_02125408_02143865.mRNA mRNA downstream 14972 2125322 ~ 2143865 (-) True CI01000029_02125408_02143865
CI01000029_02114824_02116942.mRNA mRNA downstream 39269 2114592 ~ 2119568 (-) True CI01000029_02114824_02116942
CI01000029_02107558_02110456.mRNA mRNA downstream 47488 2107330 ~ 2111349 (-) True CI01000029_02107558_02110456
CI01000029_02099152_02101364.mRNA mRNA downstream 56830 2099012 ~ 2102007 (-) True CI01000029_02099152_02101364
CI01000029_02203122_02221481.mRNA mRNA upstream 37652 2202780 ~ 2221481 (-) True CI01000029_02203122_02221481
CI01000029_02231187_02248416.mRNA mRNA upstream 66059 2231187 ~ 2249491 (-) True CI01000029_02231187_02248416
CI01000029_02254888_02257580.mRNA mRNA upstream 89749 2254877 ~ 2257580 (-) True CI01000029_02254888_02257580
CI01000029_02359382_02359992.mRNA mRNA upstream 193885 2359013 ~ 2359992 (-) True CI01000029_02359382_02359992
CI01000029_02502175_02516608.mRNA mRNA upstream 337028 2502156 ~ 2517380 (-) True CI01000029_02502175_02516608
TU173481 other downstream 864714 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 427038 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 1083649 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 1541095 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 2295215 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 2820980 4986108 ~ 4987425 (-) False G154415

Expression Profile