RNA id: CI01000029_06283570_06287370.mRNA


Basic Information

Item Value
RNA id CI01000029_06283570_06287370.mRNA
length 2132
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000029_06283570_06287370
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6283379 ~ 6288267 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACACGGGGAAACCTCTCCAATGCTGCACGAGACTACAGCAGCACAGTTAAAGGTTAAAGGAGCACAACCACTGTAGGGAAATATCACTATGCAAATGGGTAAGTTCCTCTTGATCTGTTACAGCATAGTCAGGAATAGAAAATAAAATTAATAATGCATGCATCCACACCGATCAAATGATGTATTTTGTGCAATTAGATGCGAGCAGAATGACACACTTTTCATATAGGGGTGAATTCAGGTTGATTGGGACACTTTTTGGCATTGAGATGACTCGGAAAAAGTGTCCCAATGAACCTGAATTCACCTATTAGACATCTAAATATTCGATAAATTAGATTAAAGTAGGCCTAGGCCTTAGCCTAAATCTAAATCTTTTTGCCTACAAGTTTCATTTGTTCCCTAATTCCCTATTGTTTTTTAAGAGAAGAACCGCCAGAAACCCCCTTTAATTTTAAAGAAACCATTCAGTAAAATAGTTCATAATATAATAATAGATTACAAAAGATTCTTTGTTAAATCATGGAGACTTTATTTATGTAATTTTTTTATGATTATTTTGAGTGGTGATCATTTAATTTAGACAAACGCTGCAATGCAAGACAAAATTGTAGGCTATAATAAAAATGATGGTAAACTATAAAAACTACACTGTACCGTTTTAAAAAATAAAGGCTCAAAAGGGGGGTTTCAGAACGTTCTTTAAAGAACCTTCGATCAGTTCGTAAAAAAAAAAAAACTTTTTTTTTCTTAGTGTGAAGAACATTTTAAAAAATCTAAAGAACCTTTTTCCACTATAAAGAACGGAAATATTCCATGGATGTTGAAGGTTCTTCATGGAACCATCGAAGCCACTTAAGAAGCTTTATTTTCATAATTGTATATTATGTACACGATGAATACACAGTGGTTCGTTGTTGCAGATCAGACGTACGGGGAGGTGAACCAGCTCGGCGGTGTGTTTGTCAACGGTCGGCCTCTTCCCAATGCGATCCGGATCCGAATCGTCGAACTGGCGCAGCTCGGAATCAGGCCGTGTGACATAAGTCGACAGCTCCGGGTCTCTCATGGCTGTGTGAGCAAAATCCTAGCCAGATACAACGAGACCGGCTCCATTTTACCCGGTGCTATCGGTGGGAGTAAACCCCGGGTCACGACGCCAAACGTGGTGAAGAGCATAAGGGATTATAAACAGGGCGATCCTGGAATATTTGCTTGGGAAATACGCGACAGACTGCTGGCGGACGGAGTGTGTGACAAATATAATGTTCCGTCTGTGAGCTCCATCAGTCGCATTTTAAGAAACAAGATCGGGAACCTGTCTCAGCCGAGTCAGTACGACAGCAAACCCTCTCCACCGCAGATCTCATATAATCCCGTGTATTCATATCCATACCCGAACGCCATGTCTCCGACCGGGTCCAAACTGGGCAGCCCTCCGGCTGTGTCAGTCAGCCTGTCCCGGGCCTGGCCCTCCGTGCACACCGTCAGCAACATATTAGGAATACGGGCTTTCATGGATCCCTCAGCAATTGCTGGAACAGAGAGTTATCAGCCGAAAATGGAGGACTGGACGGGTGTTAACAGACCTTCATTTCCTTCCATGCACGGAGTCAACGGGATCGAGAAACCTCCTATAGAAAGTGACATCAAGTACACGCAGGCTTCATCAAATTTATCGGGGTATGTTCCTGCGTGCGCGTACTCCGCCACTAATCAGTACGGTGTTTACGGTGGGCACGCGGGTAACTACGGGCACTGGCAGTCTCAGGGCGCGAGCCTCACCCATCCCAACAGCGGGTCCATGATACAGAGCCCGAACCTGCACAGCGCCATATCCTTCAAAAACACGCCCCGAGAAGCTGTAGGAAGAAAGAGTCCAGTGAGCAAACACCAGCACGAGAGTCTGAGCGCCGTTCATGGACTCTCAGAGTCATAAGAGCAGAGAAAACAACTCATCTCTTCATCCTTCACGTGCAGCTTCAAACACTCGCTCATCTGGATAAAACACTCCTGAATGTTTCACACCATTAAGGAAAAGTGGGATCTGAAGCTGTGGAGAGACGCCACAGAGGATTTCTGCAATATTTGCAGTAGATTTTTTTTTTCTTGTTCTTTGGTGCAAATAAA

Function

GO:

id name namespace
GO:0048706 embryonic skeletal system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177427 lncRNA downstream 13259 6269919 ~ 6270120 (-) True G156266
TU177407 lncRNA downstream 205747 6076162 ~ 6077632 (-) True G156249
TU177376 lncRNA downstream 313164 5969997 ~ 5970215 (-) True G156222
TU177373 lncRNA downstream 326183 5956866 ~ 5957196 (-) True G156219
TU177365 lncRNA downstream 340712 5942432 ~ 5942667 (-) True G156211
TU177449 lncRNA upstream 96494 6384761 ~ 6385009 (-) True G156285
TU177516 lncRNA upstream 250256 6538523 ~ 6539321 (-) True G156345
TU177528 lncRNA upstream 287460 6575727 ~ 6575986 (-) True G156357
TU177529 lncRNA upstream 289634 6577901 ~ 6578184 (-) True G156358
TU177530 lncRNA upstream 289994 6578261 ~ 6578493 (-) True G156359
CI01000029_06238355_06240993.mRNA mRNA downstream 42386 6238184 ~ 6240993 (-) True CI01000029_06238355_06240993
CI01000029_06166033_06201616.mRNA mRNA downstream 81763 6165961 ~ 6201616 (-) True CI01000029_06166033_06201616
CI01000029_06114050_06116816.mRNA mRNA downstream 166563 6113964 ~ 6116816 (-) True CI01000029_06114050_06116816
CI01000029_06099543_06110680.mRNA mRNA downstream 172699 6099528 ~ 6110680 (-) True CI01000029_06099543_06110680
CI01000029_06051592_06058664.mRNA mRNA downstream 224241 6050547 ~ 6059138 (-) True CI01000029_06051592_06058664
CI01000029_06320111_06340400.mRNA mRNA upstream 31838 6320105 ~ 6340400 (-) True CI01000029_06320111_06340400
CI01000029_06406402_06408397.mRNA mRNA upstream 117802 6406069 ~ 6408397 (-) True CI01000029_06406402_06408397
CI01000029_06410464_06420256.mRNA mRNA upstream 121755 6410022 ~ 6420256 (-) True CI01000029_06410464_06420256
CI01000029_06431763_06439215.mRNA mRNA upstream 143453 6431720 ~ 6439215 (-) True CI01000029_06431763_06439215
CI01000029_06449255_06451786.mRNA mRNA upstream 160845 6449112 ~ 6451786 (-) True CI01000029_06449255_06451786
TU175317 other downstream 1295954 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 1295954 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 1806167 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 2576127 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 2996825 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 882100 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 1078060 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 1078060 7366327 ~ 7369547 (-) False G156495

Expression Profile