RNA id: CI01000029_06305668_06307332.mRNA


Basic Information

Item Value
RNA id CI01000029_06305668_06307332.mRNA
length 1690
RNA type mRNA
GC content 0.51
exon number 2
gene id CI01000029_06305668_06307332
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6305245 ~ 6307675 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAGAGAAATCTCCGATCATGTTTGGAGGAGAATTCAGATTGTGAGCGCCACTTATCATAATGCGAAAGCTCGGATAGATTGATGTAAAAAAGCTGACGCCACTTGGAAGCTCAAAATGATACAAATTTGCTTTCTGATGGCATTCTTTGTGTATCTTCTGCTCCGCGAGTATTTTCTTCAATTACTAGGATGTCAATGGCTCGTTTGGCTCGTTGCTCCGCCCCTCGCGTTTGTCGTAAACCAGCAGTCTGACGGGAATAAGGCAGAAATAAGAGCGTCCAGGACTCGCCTCTTTCTCCAGGGCGCACACTCGGACCTCAGTGAACGCGGTACGCACGGAGGACACTTGGCGTCTGGCGGTCGCGCGCACATCCACGGGCTTGTGGCAGCTTCAGCAAACTCGCTCGCGGGCTGAACCATGTCCTTTAGCCCCAAACATTCAACTCCTTTCTCAGTGAGCGATATTTTGAGCCCGATCGAGGAGACCTTCAAGAAGTTTGCAGCTATGGAGAGCAGCGCGAGCCTGGCGTCTCCTCTGTACAGACAGACTCAGGTGTCTCAGGCGAACCTGCAGCAGCACAGCATGAGCCATAACACCTACCACATGCCGCACTCTCAGTTCTCGCACAGCGCCATGGGAGGATACTGCAACGGGACTATCGGCGCCATGGGAGACCTTCCGTCCTACCAGGAGAGCATGAGGAACGGCGCGACGGCGACGGCTTGGTACGGCTCGAACCCGGAGCCGAGATACCCGACAATCTCCAGGTTTATGGGTCCCTCAGCGGGCATGAACATGGGAACATTACCGGGCATGGATGCAAGTAAATCTATGGTGACTTTACACGCGGCGCCGCGGAGGAAACGGCGCGTGCTCTTTTCTCAAGCGCAGGTGTACGAGCTGGAGCGGCGGTTTAAGCAGCAGAAGTATCTCTCGGCACCGGAGAGGGAACATTTGGCCAGCATGATTCACCTGACCCCGACCCAGGTCAAGATCTGGTTCCAGAATCACAGATATAAAATGAAGCGCCAGGCGAAAGATAAAGCGTCCCAGCAGCCGGACACCGGAAACCTGTGTGCGCAACAGTCGCCGAGGCGCGTGGCAGTGCCAGTGCTCGTTAAGGACGGTAAACCTTGTCAGAACGGGTCCAGCACGCCGACGCCCGTCCATCAGCAGGTGCAGAACGTGATGGGCAGTGAGACTTTAGCTTCAGCCGAGGATCTGGAGGAAATGTCGCCCAGTCCTCCTCTGATGAACAGCCTCTCTCAGACTGACGCCGCGCTCATCGAGTACACGAGCAGCATGGTGAGCTCCAACCTGCTGTACGGCAGAACATGGTGACATTTCACCCACCAATCACCAGAGAAACGGATCAATATGTGAATTTCCACAGACCTTTTTTTAAAAATAATTTTTAAACGGCACTCGTCTGATGCAGGACCCTCATCATGTGAATTGTATGGATTGTAACTTTAAATCATTATTGAATGAAAAGCTTCACGCGGATGAGGAGTGCGCGCGCGTGTGTGTGATGAAGACTAGTTTAGTGTGATGCCATTAATCCGACATCGTTTTTGTTGCTTTGTAAAATACAAGCTGTAGATGAAGAAATGTTTTGTGTAAATATCTAACACTGGACAAAGAATGCTTTCTTGAAGTCTTTTGTAAGTTTAAAAGGAAAACA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176081 lncRNA upstream 42771 6262175 ~ 6262474 (+) True G155072
TU176069 lncRNA upstream 58602 6246338 ~ 6246643 (+) True G155061
TU176066 lncRNA upstream 59270 6245683 ~ 6245975 (+) True G155060
TU176047 lncRNA upstream 141328 6163680 ~ 6163917 (+) True G155041
TU176038 lncRNA upstream 141853 6162651 ~ 6163392 (+) True G155032
TU176104 lncRNA downstream 15416 6323091 ~ 6334951 (+) True G155087
TU176129 lncRNA downstream 34873 6342548 ~ 6342771 (+) True G155110
TU176144 lncRNA downstream 73792 6381467 ~ 6381786 (+) True G155121
TU176147 lncRNA downstream 77089 6384764 ~ 6385040 (+) True G155124
TU176152 lncRNA downstream 84101 6391776 ~ 6391993 (+) True G155128
CI01000029_06294088_06295613.mRNA mRNA upstream 9219 6293019 ~ 6296026 (+) True CI01000029_06294088_06295613
CI01000029_06214396_06222690.mRNA mRNA upstream 82510 6212878 ~ 6222735 (+) True CI01000029_06214396_06222690
CI01000029_06086495_06092753.mRNA mRNA upstream 211386 6086495 ~ 6093859 (+) True CI01000029_06086495_06092753
CI01000029_06076254_06083211.mRNA mRNA upstream 221034 6076121 ~ 6084211 (+) True CI01000029_06076254_06083211
CI01000029_06066859_06073942.mRNA mRNA upstream 231271 6066859 ~ 6073974 (+) True CI01000029_06066859_06073942
CI01000029_06347167_06348123.mRNA mRNA downstream 38985 6346660 ~ 6348169 (+) True CI01000029_06347167_06348123
CI01000029_06443365_06447942.mRNA mRNA downstream 135690 6443365 ~ 6447942 (+) True CI01000029_06443365_06447942
CI01000029_06453008_06476863.mRNA mRNA downstream 145333 6453008 ~ 6477090 (+) True CI01000029_06453008_06476863
CI01000029_06494856_06495812.mRNA mRNA downstream 186716 6494391 ~ 6495847 (+) True CI01000029_06494856_06495812
CI01000029_06724205_06734079.mRNA mRNA downstream 416530 6724205 ~ 6735582 (+) True CI01000029_06724205_06734079
TU176089 other upstream 16847 6282685 ~ 6288398 (+) True G155079
TU175455 other upstream 834899 5457241 ~ 5457472 (+) True G154531
TU175511 other upstream 1033710 5271020 ~ 5271535 (+) True G154587
TU174646 other upstream 1565138 4733589 ~ 4740107 (+) True G153790
TU174291 other upstream 2743241 3545125 ~ 3562004 (+) True G153475
TU176095 other downstream 123860 6431535 ~ 6490294 (+) False G155083
TU176099 other downstream 123860 6431535 ~ 6490294 (+) True G155083
TU176307 other downstream 598513 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176602 other downstream 1327158 7634833 ~ 7637834 (+) True G155522
TU176707 other downstream 1623805 7931480 ~ 7932177 (+) True G155627

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035027 True 1151 mRNA 0.54 2 NC_007131.7 48803248 ~ 48806728 (+)