RNA id: TU176069


Basic Information

Item Value
RNA id TU176069
length 306
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G155061
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6246338 ~ 6246643 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTCTCTTCATATCGTATAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGGAACGCTATGAGTACAAACTAATTTTTTGATGTCCTGCTTAACGGCGGGACTCTCAATTCTGTTAAAATGATAGCGATTGTGATTTTTTTTTCTATCGTTGTTAATAATTAGTGATATTTTCTAATTGTGTTGTACCGTAAACGGAATGTTCAAATACAGCATTTCGGTTAATTACGTGCACTTTTTCCTTTAGGGATTTTGAATGTCACACCTCGCAGTGTTTACACTACAAAATGGCATATAATCAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176066 lncRNA upstream 363 6245683 ~ 6245975 (+) True G155060
TU176047 lncRNA upstream 82421 6163680 ~ 6163917 (+) True G155041
TU176038 lncRNA upstream 82946 6162651 ~ 6163392 (+) True G155032
TU175981 lncRNA upstream 146149 6099762 ~ 6100189 (+) True G154997
TU175980 lncRNA upstream 152160 6079615 ~ 6094178 (+) True G154996
TU176081 lncRNA downstream 15532 6262175 ~ 6262474 (+) True G155072
TU176104 lncRNA downstream 76448 6323091 ~ 6334951 (+) True G155087
TU176129 lncRNA downstream 95905 6342548 ~ 6342771 (+) True G155110
TU176144 lncRNA downstream 134824 6381467 ~ 6381786 (+) True G155121
TU176147 lncRNA downstream 138121 6384764 ~ 6385040 (+) True G155124
CI01000029_06214396_06222690.mRNA mRNA upstream 23603 6212878 ~ 6222735 (+) True CI01000029_06214396_06222690
CI01000029_06086495_06092753.mRNA mRNA upstream 152479 6086495 ~ 6093859 (+) True CI01000029_06086495_06092753
CI01000029_06076254_06083211.mRNA mRNA upstream 162127 6076121 ~ 6084211 (+) True CI01000029_06076254_06083211
CI01000029_06066859_06073942.mRNA mRNA upstream 172364 6066859 ~ 6073974 (+) True CI01000029_06066859_06073942
CI01000029_06015438_06024591.mRNA mRNA upstream 221255 6015438 ~ 6025083 (+) True CI01000029_06015438_06024591
CI01000029_06294088_06295613.mRNA mRNA downstream 46376 6293019 ~ 6296026 (+) True CI01000029_06294088_06295613
CI01000029_06305668_06307332.mRNA mRNA downstream 58602 6305245 ~ 6307675 (+) True CI01000029_06305668_06307332
CI01000029_06347167_06348123.mRNA mRNA downstream 100017 6346660 ~ 6348169 (+) True CI01000029_06347167_06348123
CI01000029_06443365_06447942.mRNA mRNA downstream 196722 6443365 ~ 6447942 (+) True CI01000029_06443365_06447942
CI01000029_06453008_06476863.mRNA mRNA downstream 206365 6453008 ~ 6477090 (+) True CI01000029_06453008_06476863
TU175455 other upstream 775992 5457241 ~ 5457472 (+) True G154531
TU175511 other upstream 974803 5271020 ~ 5271535 (+) True G154587
TU174646 other upstream 1506231 4733589 ~ 4740107 (+) True G153790
TU174291 other upstream 2684334 3545125 ~ 3562004 (+) True G153475
TU173161 other upstream 3483399 2761594 ~ 2762939 (+) True G152451
TU176089 other downstream 36042 6282685 ~ 6288398 (+) True G155079
TU176095 other downstream 184892 6431535 ~ 6490294 (+) False G155083
TU176099 other downstream 184892 6431535 ~ 6490294 (+) True G155083
TU176307 other downstream 659545 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176602 other downstream 1388190 7634833 ~ 7637834 (+) True G155522

Expression Profile