RNA id: TU173161



Basic Information


Item Value
RNA id TU173161
length 1293
RNA type TUCP
GC content 0.41
exon number 3
gene id G152451
representative True

Chromosome Information


Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2761594 ~ 2762939 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTGTTTTAAAAGTTTTATTTCAAATAAGTATATTGTCATTCTGCTCTCTGAACATCACTGACATCAGTTTACATTCAGAATACACATATCACTATAAATTTGTCTGTTTGTAACGGAAAATGTAGCTAATGGAAATGACAACATCAGACAAACTAGACATGTGGACACCAGTGCTCAAGTCACCTACTGACTCTTTGGTATATTTACACACAATATATACAATCATATAACAATAAGCATTTTTTTTACCTTAGTATATCAAAACTATCCAAGCCAAACATGTATTATGCACACAAAATGATCATAAAATAATTAAATACTTTCTCAAGCGTGTAAAATACTGGACAATTAGCTAAGGGCTTTGAAAAAAAAAAAAAACTATATAGATGTTTCTCTTAAAACTTGGCAGATTTGTTAAATTTCTGAGATACAAAAGTCCAAATCTAATGATCTTCCATCAATTGTTTTTCTTCTTTGGCCCCATCCAGGCTTCCTCCAAGACTCTGACCGCTCTCATACTGCTTGTTCATTTTGTTTTGCTTCAGAGCATTTTCCGAGGTCATCTCCCAGGAAGATGGCAAACTGGCGGGGTTTCTAGCCGAAGTGATATGTGTCCGTTTCTTGTTGGTCCGGCATCCCACCCTGGTGCACAGCAGGTAAAACACCTCTATGACATTCAGTAGCAGAGACACACAGGCTACCACTAGCATAAAGATGATGAAGATGGTCTTCTCTGTGGGACGGGACATGAAACATTCCACGGTGTAAGGACAAGGAGATTGGGAACATGTAAACTTGGCGATCATAATAAAGCCATATAAATAATACTGTCCAACAATGAATGCAATCTCGAAGATGATTTTAAAAAACAACTGGGTCAGATAGCTGCCGAGCAGGTTTCCTTTAATTTTGACGTGGCCAGTGTCATCTGTGTATTTGGGTGACTTCAACTTGTGACCATCGCCAAGTCTTTTAATCTTCTCCCTGAGTTTGTTCTCTTGGTGAATGACCTGCACCGCATGGCCGAGGTACACCAAAGTTGGAGTGGACACGAATATAATCTGCAAGACCCAGAAGCGGATGTGCGAGATGGGGAACTGCCAGTCGTAGCACACGTTGCAAACCAAACTAGATTGTTCATCACCCCAAACGCTCTCCGCCGCCGCTCCCAGCACCAGGATTCTGAAGATGAAAAGGACGCTCATCCATATTTTGCCAATGACAGTGGAGTGAGATTGCACTTTGTCTAATAACGCCGAGAGAAATCCCCAGTCTCCCATGTTTGCTGATGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU173156 lncRNA upstream 25543 2735816 ~ 2736051 (+) True G152446
TU173134 lncRNA upstream 136847 2624445 ~ 2624747 (+) True G152433
TU173133 lncRNA upstream 137685 2623482 ~ 2623909 (+) True G152432
TU173127 lncRNA upstream 147311 2613991 ~ 2614283 (+) True G152426
TU173125 lncRNA upstream 150840 2610530 ~ 2610754 (+) True G152424
TU173183 lncRNA downstream 138721 2901660 ~ 2992153 (+) True G152465
TU173184 lncRNA downstream 193172 2994422 ~ 2996938 (+) True G152466
TU173240 lncRNA downstream 289556 3052495 ~ 3052730 (+) True G152522
TU174210 lncRNA downstream 380048 3142987 ~ 3184240 (+) True G153405
TU174228 lncRNA downstream 428654 3191593 ~ 3201635 (+) True G153423
CI01000029_02750295_02751549.mRNA mRNA upstream 10036 2747982 ~ 2751558 (+) True CI01000029_02750295_02751549
CI01000029_02684591_02727897.mRNA mRNA upstream 33427 2682519 ~ 2728167 (+) True CI01000029_02684591_02727897
CI01000029_02583370_02587687.mRNA mRNA upstream 173897 2583370 ~ 2587697 (+) True CI01000029_02583370_02587687
CI01000029_02488613_02490983.mRNA mRNA upstream 270567 2488350 ~ 2491027 (+) False CI01000029_02488613_02490983
CI01000029_02445216_02480549.mRNA mRNA upstream 280930 2444973 ~ 2480664 (+) True CI01000029_02445216_02480549
CI01000029_02772065_02813214.mRNA mRNA downstream 9126 2772065 ~ 2814491 (+) True CI01000029_02772065_02813214
CI01000029_02860076_02868432.mRNA mRNA downstream 95970 2858909 ~ 2868937 (+) True CI01000029_02860076_02868432
CI01000029_02904113_02950205.mRNA mRNA downstream 140841 2903780 ~ 2951323 (+) True CI01000029_02904113_02950205
CI01000029_02956475_02956765.mRNA mRNA downstream 192949 2955888 ~ 2956888 (+) False CI01000029_02956475_02956765
CI01000029_02976262_03013586.mRNA mRNA downstream 213168 2976107 ~ 3013913 (+) True CI01000029_02976262_03013586
TU172657 other upstream 1233695 1526786 ~ 1527899 (+) True CI01000029_01526863_01527414
TU172071 other upstream 2389672 366580 ~ 371922 (+) False G151495
TU172069 other upstream 2389805 366580 ~ 371789 (+) False G151495
TU172068 other upstream 2389870 366541 ~ 371724 (+) False G151495
TU172072 other upstream 2389870 366580 ~ 371724 (+) False G151495
TU174291 other downstream 782186 3545125 ~ 3562004 (+) True G153475
TU174646 other downstream 1970650 4733589 ~ 4740107 (+) True G153790
TU175511 other downstream 2508081 5271020 ~ 5271535 (+) True G154587
TU175455 other downstream 2694302 5457241 ~ 5457472 (+) True G154531
TU176089 other downstream 3519746 6282685 ~ 6288398 (+) True G155079

Expression Profile