CI01000029_02488613_02490983


Basic Information

Item Value
gene id CI01000029_02488613_02490983
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2488350 ~ 2491371 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_02488613_02490983.mRNA
CAATAAAAGCCCTGGAGATAAATAGGTCTGCACATCCTTACTGAGGAGGAGCGACTCTTTGCTGTAAGTAATGCAGAGCGATGCATACAGAGAATGACCATTATGGTCAGCACACATACGACATGGTCTTAAATATGACGAATGTTTTTTAATTAGACTCTCCACCGCAGTGTATTACATGTGCATGGCCATCAGAGAGCTGCAGCCTGATTGCACACTTAAGGTGGCGCGAGCTGTTCTGATGATGACACCCTCACTAAATAATGCAGGAGGCCAGTGGTTTTGTGCTGCGTTTGTACGCGAGGGCTCAGGGTGTGTCCACGGCAGACTCAGCAGATGCTCTGAGTGGGCGGCACAGAATGAGATCAGGACAACAGGAAGATTTTGGCTCCAGCTTTGTGCACGCTCAGCAAACAAACTGTCCCTTTAGAGTGTTAACAACGGATTCAGACTTATTAGCTGCACACGATGAAACAGCAAGGTGTTTAGAAAGAATTTTTGCTCCTTTGAGATGTTAGAAACCCAGTGAGTCATGACAGTGGGCAGACTTTAGTTTTAGCAA
>TU172960
GTATATCAATATTTATTGGCTGCTTTTTTTTTCCTTTCGCAGTTTAGTTTCAGTTACATAATTTATCTCAGCATTTTGAAAGGACATATACACATATTTACTTCCATTCAACAGGTTCCTTTAAACCACATGTAGTGTTCTGCATGATAATACCTCTATACTGCATGGGCTTCTCAGCACTAACACCCTATTATACAATCAAAGTGATATGGAAAAGAGAAGTCAACAATCAAAGAAATACCGAATGCATTGTTCCTGTAGTCTTTAGAAAAGCAGGGAATAATTGTTGTTTTTCCTTGACCCAGGGTTGCTTTGGTTGTAATGGCAATACATGTACGTATCCATAGAAAGCAAGGCTAGAAAAATGGAGACAGTTTGATCAACATTCCGATTGCCTAAAATACAAACAAGGCTGTTCATAATGCAGCATGACCAAAAACATATACAGGAATACAAATAAATTCAAGGTGTATTAAAATACTGATCATGGCATTAACACAGCTCTACTAAATATATACTTAAACATTTTACACCATTGTTTGATTCCTTTCTGCTCACTATATCCTCCAATGATTCAGAAAATGTAATAATAACTATACATAACGGCATTCTCTGAACCCAAAGTAGTATGACATCACTCTCTGGGAAATACATTCAGATTCACAACAGCCAATTGTCAACTTTTTGTCTTCCCTGTTTCTGTTCAGGATGAAACAGCAAGGTGTTTAGAAAGAATTTTTGCTCCTTTGAGATGTTAGAAACCCAGTGAGTCATGACAGTGGGCAGACTTTAGTTTTAGCAAATAAAAACTGGTGATCACTTTCCTTAACATAAGTTGTCAGCAAAATATAAAAAGTCATAATCTGGACTGTTAACCTGCTTGTTGTGAAGAGGAAAAGTCTGATATAGATGTAAGTGGTACAGACTTAGTGTCCGGAGCTGCAGATGGAACGAAATATCAATGTTTTTTCTTTTGTTTGTATAAACACTGAAACATACATAATGTATTAACAGCATTTAAAATGTAACTATGTACAGTATAAACAACTGTAAAGATGTTTATGAATAATGAATGGAATTAAGAGGCTGATTGTATTGTATTTAATCCATGACATTGCAAATATGTATATAATGGTATGACTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_02488613_02490983.mRNA False 562 mRNA 0.46 2 2488350 2491027
TU172960 True 1146 lncRNA 0.33 1 2490226 2491371

Neighbor

gene id symbol gene type direction distance location
CI01000029_02445216_02480549 NA coding upstream 7686 2444973 ~ 2480664 (+)
CI01000029_02432238_02441531 NA coding upstream 46761 2432238 ~ 2441589 (+)
CI01000029_02427134_02429596 NA coding upstream 58255 2426098 ~ 2430095 (+)
CI01000029_02343103_02352351 NA coding upstream 135568 2340949 ~ 2352782 (+)
CI01000029_02192568_02196383 HDDC2 coding upstream 291659 2191911 ~ 2196691 (+)
CI01000029_02583370_02587687 SERINC1.L, SERC1, SERINC1, SERINC1.S coding downstream 92343 2583370 ~ 2587697 (+)
CI01000029_02684591_02727897 NA coding downstream 191492 2682519 ~ 2728167 (+)
CI01000029_02750295_02751549 NA coding downstream 256955 2747982 ~ 2751558 (+)
CI01000029_02772065_02813214 TBC1D32 coding downstream 281038 2772065 ~ 2814491 (+)
CI01000029_02860076_02868432 NA coding downstream 367882 2858909 ~ 2868937 (+)
G152281 NA non-coding upstream 3404 2482385 ~ 2484946 (+)
G152349 NA non-coding upstream 37280 2450784 ~ 2451070 (+)
G152348 NA non-coding upstream 38617 2449414 ~ 2449733 (+)
G152347 NA non-coding upstream 62356 2425763 ~ 2425994 (+)
G152297 NA non-coding upstream 201460 2286534 ~ 2286890 (+)
G152373 NA non-coding downstream 36048 2527075 ~ 2527375 (+)
G152374 NA non-coding downstream 36789 2527816 ~ 2528163 (+)
G152402 NA non-coding downstream 113377 2604404 ~ 2604932 (+)
G152421 NA non-coding downstream 117244 2608271 ~ 2608578 (+)
G152424 NA non-coding downstream 119503 2610530 ~ 2610754 (+)
CI01000029_01526863_01527414 NA other upstream 960451 1526754 ~ 1527899 (+)
G151495 NA other upstream 2116428 366541 ~ 371922 (+)
G151415 NA other upstream 2263105 170521 ~ 225245 (+)
G152451 NA other downstream 270567 2761594 ~ 2762939 (+)
G153475 NA other downstream 1054098 3545125 ~ 3562004 (+)
G153790 NA other downstream 2242562 4733589 ~ 4740107 (+)
G154587 NA other downstream 2779993 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 2966214 5461497 ~ 5470346 (+)
G152359 NA non-coding upstream 713 2489088 ~ 2489513 (+)

Expression


Co-expression Network