CI01000029_02343103_02352351


Basic Information

Item Value
gene id CI01000029_02343103_02352351
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2340949 ~ 2352782 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_02343103_02352351.mRNA
CTATAAAAGCCAGTAAGAGATTAATTTCCTTATTTCTACTTTCAGAAGAATAAAGCTTTAAAAAAAACATGAAAAGACATTCTTGTGTGATCACCTAAAACCCCTGCATTTTCAACAAAGCACTGTTGCTTTTGAGGCACTTGAGTGAAGGTTAAACTACATGCCTGTACTTCCTGCAAGATAAAACTCTGACAACGCAATGCCAAAGTGATCTTTACTGTTTTTGCCCTCTACATCTCTATGGTTTGCAGTGGTGAATGCACATTTCATCATATTACAGCATGTGGAGGATCTCCTCTCTGTTCAAACGTTGCCTCCTCTGAGATTCTGATTTATGCAGCTTCCTGTTTTTACCACCCAGCTTCCTAGTCCCCATGAGAGGGGTGGGTGGTCTGGGGCTTTGATTGCGTACTGAGCCTTTGGTGCCTGTTTTAGGCTCACGCTGCTGACACATCTCACTCTGAGTGGCTGAAACCATGTTGGGAAATGACAAGTGGTTGCCAGCACATCCACTGGTCAAGTCCTGACAAATCACTCCATCCTTTCCTCAACTGATGAAACACGGCTGGCAGACTTCTCAGCATGCATGACTTGCCAGACTGTTTTATGTTGGTTAGTGCTATAACTGTAGTGGAAAAACACAAAAAAAAAATACTACAGTAAAAATCTGATAATTGGTTAACTGTACACTGTAAAAAATGACCGTGATTTTAACGGTAAAAGACCGTAAAAATGCTATGGTGAAAAACATTTAATTGGTTTACAGAAAGTTTCCGTACTATATACGGTGAATAGTAATAGATCTAACGGTACATTTAATGTAATTTTATGGTAAAATATCATTAAATCTACAGTTTTTGGAAGTGAAAAATAACAAGTCATTTTATAATTTACAGTGTAAAACCATAAATTGACATTCCCACAATTCCCTGAGTGACACTTACATTTGATGTATTTTCGTTGAAATAACTGTTTCTTCTTAGTTTTTTCTAATCAGTCATGTACATTAGGGTTTTATGTTACATGTAATGTTGTTAAATTAATGTTTATTGCATTTTTAAAATTTCATGTGTTACCATGATGGTGTTTAGTGTTTGTGTGAATGACACTTGTTAGTACTAGTAGTATTAGTACTTCAATAGGTTGGTAAGTTAACATTATATCAGTTAATGAAATAAGCCTTTTTTTAACCGTAAATTTAACGGAATTTTTTTTTTACAGTGTGTAAAATAAACAGTTATGAACCATAATTATTACAATATAAACCTTTAAATTATATGGCTTTGAACTGTAAAATAGACAGTAAACTGTCCCGTAAAACCTAAAACGTTGCTACCGTATTTTTTACGGTAAAGTTCTGGCAACCACAGCTTCCGTTTTTTTACCATAAATTTTACTCAAGAAGAAAATATATGTACACCACCATTCAAACATTTTGTAACTTTTTTGTTTTGTTTTGTTTTTTTAGGAAATCAATACTTTTATTCAGCAATGATGTATTAAATTGATCAAAAGTTACAGTACAACTGTTTTTAACATTGATAATCACAAATATCATTATCATTGATAAATGTTTCTTGAGCACCAAATAAACTTATCAGTGTGATTTCTGAAGTATCTTGTGACACTGAAGACTGTAATGGTAATGGTGCTGAAAATTCAGCTTTGCCATTACATAATTAAGTTATATTTTAAAATACATTAAAACAGAAATCAGTTATTTTAAATTGTAATAATATTTCACAATATTGCTTTTACTGTATTTTTGATCAAATAAATGCAGCCTTGGTGAGCAGAAGAGACTTCTTTCAAAAAAACATGACAAAATCTTACCAAACCCCAAACTTTAAAAGGTAGTGCAGTTTTACAGTAAATTATCACCAAAGTAATTTTTTAAAAATATGAGCTATAAATAAATAAATAAACTGTATCCAGATGTGATGAATCACACCTCTGTTTTTAGTAAATTATTGCAAAAAAACAAAAAAAAAACCAAATGTAAGTAAAAATATTTAAAGTATCTTTAGCAAATACATAAAATATCAAAAATAAAAAAATTGATATGTGCTGGTTAAGCTAGTAAAGAAGTGTGTTGAGTGCACCAGCACAAATATATTTACTTAAAAAGCAATACAAAAATACTGATTAAAGAAAATGAATTGCAGTGTTGGCCTGAATGTTAAAATTCCCCATGCTTCAAACAACAAGTATATGCATAACTATGAATATGATAATACGCATCAGTTTAGTACTTATTTCAATGCTCATTTCATAGTTCAGACTTTCCCTCAAGATCACTGCCAAACGACGAATGGACATAATGACGAACTAAACTCGGAGTGGAGTACTGAAGCAAACAATGAGAACAGTTTGGCTCTCAAAAGCACGTTGATTAGGATGAGCACAACACCGTGCAAACGGTGGCCCTGTGCGCGAGTGAGGCCGGATCTAAATGTACTCTCAACAAATGAACTGACAGTGTGGAAAATGGAGTTCTCCATCTCAGACACAGAGCTAGTGGTTTCCACTTTAAAATCCAGTAACAAAAGTCACGTCCACTCCGCAATTTCACCAAACAGATTTGACCAGAGTAATCAATGCGAGGGACTCGAGAATGAAGAAAGCGGTCAGGTGGAGCAGAGAAGGAAAGGTCTCCATGAAAAACCAGCGAAATGTAGCAAAATTATTGACCTGTTCAGGGTTTCAAGTGCAGAACCTGATGGCATGAGAGGCTATAACAGAGAAATGATAGCTGAATCCGGCGATCCGTCTGACATCTTTGACACCGTAGCTTGCAAAGCAGATCTAAAGTGAAATGTTCATTCTGTCATCTGAGATGCTTGATAAGATTGCACGTTAATGACATATCAACCAGAAGACCAGATTGACTGCCAGCCATTTCTAGGTGATTTAAAGATTAAAGGATCAATCTCCATTACAGATCTATGCCCGAGGAAAGGAGTGCAGGCATTTGCGTTTTTATCTTCAGCAATACACTACATCATTTCTTTCCACCTTATACCTCAATACACTTGCCCTGCAATGCTTCAAAAATCTTACGACCAATGATGTAATGCAAATACGCAAAAGCATGGTATAACACACATATCCTCTGCAAGTAAGGCAATGATAATCTTTGACCTGCAATTATGGACTGTTGTTACATGATTAGTGGCTTGAAGTGCCCATATAAAAGCTTGCACTGCCACCGAACTGAAGCAGCTGAGTATTAAACAGAAATCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_02343103_02352351.mRNA True 3245 mRNA 0.35 5 2340949 2352782

Neighbor

gene id symbol gene type direction distance location
CI01000029_02192568_02196383 HDDC2 coding upstream 144258 2191911 ~ 2196691 (+)
CI01000029_02102219_02105661 ESCO2 coding upstream 234923 2102070 ~ 2106026 (+)
CI01000029_02069731_02079236 SCARA3 coding upstream 261693 2069293 ~ 2079256 (+)
CI01000029_02037027_02050337 REPS1 coding upstream 290539 2037027 ~ 2050410 (+)
CI01000029_01941376_01941659 NA coding upstream 398429 1941376 ~ 1942520 (+)
CI01000029_02427134_02429596 NA coding downstream 73316 2426098 ~ 2430095 (+)
CI01000029_02432238_02441531 NA coding downstream 79456 2432238 ~ 2441589 (+)
CI01000029_02445216_02480549 NA coding downstream 92191 2444973 ~ 2480664 (+)
CI01000029_02488613_02490983 NA coding downstream 135568 2488350 ~ 2491371 (+)
CI01000029_02583370_02587687 SERINC1.L, SERC1, SERINC1, SERINC1.S coding downstream 230588 2583370 ~ 2587697 (+)
G152297 NA non-coding upstream 54059 2286534 ~ 2286890 (+)
G152266 NA non-coding upstream 88440 2252305 ~ 2252509 (+)
G152262 NA non-coding upstream 91093 2249655 ~ 2249856 (+)
G152245 NA non-coding upstream 113262 2225603 ~ 2227687 (+)
G152244 NA non-coding upstream 115883 2224844 ~ 2225066 (+)
G152347 NA non-coding downstream 72981 2425763 ~ 2425994 (+)
G152348 NA non-coding downstream 96632 2449414 ~ 2449733 (+)
G152349 NA non-coding downstream 98002 2450784 ~ 2451070 (+)
G152281 NA non-coding downstream 129603 2482385 ~ 2484946 (+)
G152359 NA non-coding downstream 136306 2489088 ~ 2489513 (+)
CI01000029_01526863_01527414 NA other upstream 813050 1526754 ~ 1527899 (+)
G151495 NA other upstream 1969027 366541 ~ 371922 (+)
G151415 NA other upstream 2115704 170521 ~ 225245 (+)
G152451 NA other downstream 408812 2761594 ~ 2762939 (+)
G153475 NA other downstream 1192343 3545125 ~ 3562004 (+)
G153790 NA other downstream 2380807 4733589 ~ 4740107 (+)
G154587 NA other downstream 2918238 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 3104459 5461497 ~ 5470346 (+)

Expression


Co-expression Network