CI01000029_02427134_02429596


Basic Information

Item Value
gene id CI01000029_02427134_02429596
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2426098 ~ 2430095 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_02427134_02429596.mRNA
GTATAAAAATAAGTTTATTCCCACCCCCAAATTCATGCCACTGGCTGATCGGTATGCTCAAATTTGCTCCAGAAGTAATTTTGCTTTGGTGTGTAGTATTTTAATTGTGAAATTTTACACCCAATTCCTCAAAATTGCACACACTTTTTAATTTAAAAATGTAAGAATTTAACTAAAAAAACTAGTTCTGTAGCTTTTAGTCCACATGTATTAGCTTTGAGGTCATCTAAATGTTAGAATACTCCTAGAAGTTGACAAAACAGTCTTTTAGCAGCTATATACACATTTTTCTGTGAAAACAGAAATACTGATGACTCATCTACAGTAGCACTTAAATAAAATAAAATATTACCAATAGCAAATAGCTGACAAGAAATAGCAAATCATAGTGGTAAATGGCTATGACATAACTAAAGCTTATTGACAATTCTGAAAAATAAGTCGTGCCCCAACTTAATTTTTCAATAGAAAAATACCTCACCACAAGAAAGAAAACTGTGCTCATCAAACGATTTCATACAATATTTAACCGTGGAAAGCGTTCTGACATCTCATGCTTTTCCATATTCCCTGAAATACAGGGAAGGTAGAGCTGAAATAATAAAATGTAATTTGCTCTTTAAAGGTCAACTTTCTAAATGTTCCATTTGTACGGTTTATGAAAAAGGTTTCGCTTGATTTGCATGAATATTTAACAAGCCACCGTAAACAGCTTACAGGCTTAGTTTCTTACATGCATTCATTGACAGTACTTCTCTACCTCAATCTTAGCTTTAAAAAATCTGCATTAAAGAGATCTCTATACATGCTTTTAAAGTATAATATGCAGTATTTAACTATGCAAATGAGCAGCAAATGGTGCTAAAATGGATCAAAATATACATTTCAGAGGTGTGTTGTGTGTATTCGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGGTTGCCTTCCGCACACTCACCCGATGACAGCCCGGCTCCTCTTTGGGGGGGGCCCTGGCACAAATCCAAGTTTTATTGGGACTCCAACAGGAAAGGCACAGAGAGACATTGTGGTGCTTTCGATCGGAAAACTATTCTGGACTGGGGAATTGACTCTTGAGATTGTGTTCAGCCTGTTAGTGCATGAGAGAGATGGAAGCTCTCACTTACCTGGGATTAGTTGCCATGGATATCAACATAAGAATCTGAGCAGGACAAGATCTTGTATCAAAATAAGCAATGCAAAAAGGGCTATTTCCTTCCGCCACTGTTCGGTTTACAGCACAGTGAGGGTTGAAGTGGCATTTGTGCACCGTGTTGCCATGGAAGATTTCTCCTAAGCCTTTGGTGTACACTATCTGAGATCTTATGTTTCTGTACAGTCAGATACTGAAGCTTGCAGACAGTCTGCAGGGGCAAAATCACGATAACATACAGAAAGATGCACTAAAACTCCAAACCAGATGCAGCTAATCATAGGCTGTCTAGAGAAAGCTTCTTGAGTCAGCATTTGGATGGGACGTCTAATCCTAAGTTTGACCACAGGGACCAACGTGAAGAGATGCAACAGGTGGTCTTAGCTGATACTTTCAGCGTGTGACATCTGTATCAGACCCCCACGTGCATAGATACGTCATTATGTGCAAGCCAAGAGTACAGGCAACAGAAAACATTGCTTGTCTGAGCAACAGGACCAGCATAAACAAGAACCACTACCCCGATCTTGGTTCAGATTCACAATGGATCATCCACAAATAGTTTTTGTAAACACAATCACAACAGCTTGCGCAAGAATCAATCATTTACTATGACTTAAGTCAACAAAATTGGCAAAGATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_02427134_02429596.mRNA True 1892 mRNA 0.39 3 2426098 2430095

Neighbor

gene id symbol gene type direction distance location
CI01000029_02343103_02352351 NA coding upstream 73316 2340949 ~ 2352782 (+)
CI01000029_02192568_02196383 HDDC2 coding upstream 229407 2191911 ~ 2196691 (+)
CI01000029_02102219_02105661 ESCO2 coding upstream 320072 2102070 ~ 2106026 (+)
CI01000029_02069731_02079236 SCARA3 coding upstream 346842 2069293 ~ 2079256 (+)
CI01000029_02037027_02050337 REPS1 coding upstream 375688 2037027 ~ 2050410 (+)
CI01000029_02432238_02441531 NA coding downstream 2143 2432238 ~ 2441589 (+)
CI01000029_02445216_02480549 NA coding downstream 14878 2444973 ~ 2480664 (+)
CI01000029_02488613_02490983 NA coding downstream 58255 2488350 ~ 2491371 (+)
CI01000029_02583370_02587687 SERINC1.L, SERC1, SERINC1, SERINC1.S coding downstream 153275 2583370 ~ 2587697 (+)
CI01000029_02684591_02727897 NA coding downstream 252424 2682519 ~ 2728167 (+)
G152347 NA non-coding upstream 104 2425763 ~ 2425994 (+)
G152297 NA non-coding upstream 139208 2286534 ~ 2286890 (+)
G152266 NA non-coding upstream 173589 2252305 ~ 2252509 (+)
G152262 NA non-coding upstream 176242 2249655 ~ 2249856 (+)
G152245 NA non-coding upstream 198411 2225603 ~ 2227687 (+)
G152348 NA non-coding downstream 19319 2449414 ~ 2449733 (+)
G152349 NA non-coding downstream 20689 2450784 ~ 2451070 (+)
G152281 NA non-coding downstream 52290 2482385 ~ 2484946 (+)
G152359 NA non-coding downstream 58993 2489088 ~ 2489513 (+)
CI01000029_01526863_01527414 NA other upstream 898199 1526754 ~ 1527899 (+)
G151495 NA other upstream 2054176 366541 ~ 371922 (+)
G151415 NA other upstream 2200853 170521 ~ 225245 (+)
G152451 NA other downstream 331499 2761594 ~ 2762939 (+)
G153475 NA other downstream 1115030 3545125 ~ 3562004 (+)
G153790 NA other downstream 2303494 4733589 ~ 4740107 (+)
G154587 NA other downstream 2840925 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 3027146 5461497 ~ 5470346 (+)

Expression


Co-expression Network