G152281


Basic Information

Item Value
gene id G152281
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2482385 ~ 2484946 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU172968
GAATCTTGTTTTCACTTTGAGTTTTATTTTTCTGACCCCATTGGCAGATATTTTCTTCTGGTTTTAATCATAAACTCACATTATGATCAACTGTTCAGAAAACAAGACTTAATATCTTAATAAGTAAATATATCTTGAGTTAAGAATGTTTAGATTTTTGTGCTGGAAAATAAGACAAAAATACAGAGTAAGAAAATAATTTTTTTGCCTGTTGAAGACCCCTGCCCTAGATAGTCATCAAAAAGTGTGTTGATTTACTGTAAAATACAATAGAAGAGTAAGGGAGATATATGTGTATATATATTATTTGACTTTACTTTGACCAACAGTGATTTTCAAGATGTTGATTGTTGATCTGATGGATATCTGTCCATTCTCAGAGGCATCTTGTTCCTGTAACATTTTGCTCCGAGCGCGACTTAAACCAGCATGGGAGGCGCGCGCGCTAACAAGACCGCTAAAGACCGCAGCCTCAAGCATGCCTCCTGAAGCTGGGGGAGTGAGGTTTACTTGCACAGCTCTTTCTAGCCTGCCTCTGTTACACTCAACTCCCTAAACCTCACTCCCATCCGGGTCACACCAGAGGGGTTCTACTTGCACCGCTCCGAGCAGGATTCGAACCGGCTTCTCTGGCGTGGGAGGTGGGCGCACTAACAAGGATGCTAAAAACAGTAGCCTCTAAAATCCTTCTTGAGGCCGGGGGAGTGAGGGTTACTCTCACAGCTCTTACTAGCCTGCTTCCGTTACACTCACTCCCATCCGGGTCATGGCACCAACGTAGTCCCTCTGGTTCTACTCGCACTGCTCCGAGCGGGATTCGAACCGGCTTCTCCGGCAGGGGAGGTTGACGCACTAACAAGGATGCTAAAAACCGTAGCCTATAGCATGGCTCTTGAGGCCGGGGGAGTGAGGTTTACTCTCACAGCTCTTATAAGCCTGCCTCCGTTACACTCACTCCCATCCGGGTCACGGCACCAACGTAACCCCTCTGGTTCTACTCACACCGCTCCGAGCGGGATTCAAACCGGCTTCTCCGGCAGGGTAGGTGGATGCACTAACAAGGATGCTAAAAACCGTAGCCTCTAGCATGCCTCTTGAGGCTGGGGGAGTGAGGTTTACTCTCACAGCTCTTACAAGCCTGCTTCCGTTACACTCACTCCCATCCGGGTCACGGCACCAACGTAACCCCTCTGGTTCTACTCGCACCGCTCCTGGCGGGATTCGAACCGTCGTCTCTGGCATGTGAGGCTGGCACTCTAACAAGGACACTAAAGAATGTAGCTTCCAGCGTCAATCGCTAGTGCGCCTCTTGAGCACAGGGGAGTGAGGTTTACACGCACAGCTCTTACTAGCTGGCCTCTGTTACACGGGTTTGACAGTTTCAACCAGAAATACTTTGTCTTATTCAAGAACACACTGGCGTGTGATCTTTATTTTCATTAACTTAAGGATCGGCACGACCTAAAATACTGTATGTCCTTGAATGTCTTCTCATAATCCACAGCAGTGAAAAAAATCTAAATGACAAGAACAAGAGTGAACAGCCGGCTGAATTTTGATTGCTGCTCTGCATATGGGCTGCATATGGTCATAGAAAGACTGCATAATGTTAGTACTGTACGTAGTGATTGCAGCAGAAGGCTGTTTCTCTTTAATCAGGACATAGTAAGACAGTTAGCTGTAACTGTCTGACTTTGAACATAGAAGTAGGCCACAGAAATAATCTCACTTTGAAGTTGCAGCATGCAGCTTCCTGCAGAGAGGACATCAACTGTACTGTGGATATTCCTAAAATATATAAATGTAAGAATGAACAATATAAATATTGATGACCCTGAAAAACATGTATAAAATGGGGCACCATTTTAGTCCGACGTTGAGAAAAATCACTGTCTTAGCTTAAATGAGAGACAGTTTACAGTGAAAATGCAATGTTTACGAGGTGGAACCTCAGTTGTTGATTCTCAAAAGGCTTTGAGTGCCATAGATGTATAAAATCCATATGTAGGGATAAACATTTTATTTTAAGAAGTGACAGAAGTTGTTCTTACAGTTTTTGAATGTGTTTGGTATTGCATGACCCCTGAGAATATTGCACATGTCAGTTTCTGATGTGCTAAATTAGCTTGTTACACTGAATTTCAACAGAGGCTGCTAAATTATCTTTCTTTCATAAGACCTGATGACATGAGGTTGGGCACCTGGAACTTGTCAGCCTTATAAGCTAAATTATGTTTTGCTTATAAAAGGATAGATCACTTTTTCTTTCACAAAGTAGTAGGATTTTGTGGTTTGATTTATCAGTTTTACTAGGGCATGTCAGATTGCTCCATAATTTGTCATCACATCACAGAGACCTAGTTTACAGTTTTAAATATGTCAAACTGTCATGTTCTTATGAATGTTGAATAAGATCTGTCAGTAGAACCAAAGGAAATTTTGACTAAATCAATGTTGTTTTTTGTTTTATTTACATCTTGGAGTGGGCAAAATTCTGGTGATAAAGTGTGCAAACTTGTCTGTGACAGAATGTCTTTTTTCGTGTACATTATTCATTTGGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU172968 True 2562 lncRNA 0.43 1 2482385 2484946

Neighbor

gene id symbol gene type direction distance location
CI01000029_02445216_02480549 NA coding upstream 1721 2444973 ~ 2480664 (+)
CI01000029_02432238_02441531 NA coding upstream 40796 2432238 ~ 2441589 (+)
CI01000029_02427134_02429596 NA coding upstream 52290 2426098 ~ 2430095 (+)
CI01000029_02343103_02352351 NA coding upstream 129603 2340949 ~ 2352782 (+)
CI01000029_02192568_02196383 HDDC2 coding upstream 285694 2191911 ~ 2196691 (+)
CI01000029_02488613_02490983 NA coding downstream 3404 2488350 ~ 2491371 (+)
CI01000029_02583370_02587687 SERINC1.L, SERC1, SERINC1, SERINC1.S coding downstream 98424 2583370 ~ 2587697 (+)
CI01000029_02684591_02727897 NA coding downstream 197573 2682519 ~ 2728167 (+)
CI01000029_02750295_02751549 NA coding downstream 263036 2747982 ~ 2751558 (+)
CI01000029_02772065_02813214 TBC1D32 coding downstream 287119 2772065 ~ 2814491 (+)
G152349 NA non-coding upstream 31315 2450784 ~ 2451070 (+)
G152348 NA non-coding upstream 32652 2449414 ~ 2449733 (+)
G152347 NA non-coding upstream 56391 2425763 ~ 2425994 (+)
G152297 NA non-coding upstream 195495 2286534 ~ 2286890 (+)
G152266 NA non-coding upstream 229876 2252305 ~ 2252509 (+)
G152359 NA non-coding downstream 4142 2489088 ~ 2489513 (+)
G152373 NA non-coding downstream 42129 2527075 ~ 2527375 (+)
G152374 NA non-coding downstream 42870 2527816 ~ 2528163 (+)
G152402 NA non-coding downstream 119458 2604404 ~ 2604932 (+)
CI01000029_01526863_01527414 NA other upstream 954486 1526754 ~ 1527899 (+)
G151495 NA other upstream 2110463 366541 ~ 371922 (+)
G151415 NA other upstream 2257140 170521 ~ 225245 (+)
G152451 NA other downstream 276648 2761594 ~ 2762939 (+)
G153475 NA other downstream 1060179 3545125 ~ 3562004 (+)
G153790 NA other downstream 2248643 4733589 ~ 4740107 (+)
G154587 NA other downstream 2786074 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 2972295 5461497 ~ 5470346 (+)

Expression


Co-expression Network