CI01000029_02102219_02105661 (ESCO2)


Basic Information

Item Value
gene id CI01000029_02102219_02105661
gene name ESCO2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2102070 ~ 2106026 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_02102219_02105661.mRNA
CTACATATACCTGTATCATAGCAATAAGTTTGACAGGAAAACATACAGTTTGATCCTTTTAAGTACGCACAATATTCTCACCGTCTGCTGACATAATTTACTGAATTCGCTCGTTACTACTTTTTCAACACATTTCTCAATATGATATAATGGCAGAAAAACGAATATTGCAGAAATATAAGAATGTTCCAGAAATGCAAACAGTTGCATCCTATAGAATTGTATCACATCATGTTCTGATTCCCTGTCTTCTCATTTCAGGTGATTTGAAGATGTTATCCCGAAAAAGAAAACATGGCTCTCCTGATGTTGAAAGTAACCCATCTAAGAAACAAATAACAAGCCCAAGAAATTCTCCAAGAAGGACAACTCGACAAAAAGAGAACATTCCCATCTCGCTGGCATCACCCCAAAAAATTCCCAGTACACCTAAGAAGATGCCGAGGACCTCTTCACTAGAATCTCCTCCGAAACGGATCTCACCACGCAAAACAGTCTTGGGAGCAAGATCCTTCTACAGCAAGCAGAAACCTCTGTATCTCACACCTCTTGAAAGGAAACTGTTGAAGGAAACCAAGTCACCACCGTCAGTCCCTAGCAAAGAGCCATCACAACCCGCTTCAACTGCTGGGAATCCTGTTAAAAAACCAGTGAGGAGGGTTCAAAAGAAAACCAGTGTCGCTGGTCCACAGTCTAACCTGAAAGGTTACTTTACTGCTAAACCCAAAGGGAAGAGTCCCTCTGACACACAAACAGATCAATCACCGAAGGTCACGGTGGCCCCCATTTCATTTAGCACTATGAAGTCCAAAGGTAAACCCAAGCTTGTTGTGGGAGCAGCTTTCTTCAGCACTGGAAAAAAGCCCACTTCACTGTACAAAAAGTCTGCAAAGACCACAAAGCCTAAACAGCCCTCAACCTACGAGAAACCAAACTCTCAGAAACCCATGAAGGAGAAGGAAGTGACATCAGCGCCAAGAGAGCGTTCCCCAGTCCGCCATGCCGTCTTCTTAAAAAAACACCCGGATGTGGACAACACAACTAAAGTTACCAATGATAAAGATGTTGAAAGCAGCGAGTCAACGCAAGTGATGTTAAGTCCCAAGCAGATGTCTCCTCAGGTCCTGGCCGATTTACATGGTATTACCAAAGACATAAAGGTGATTTTGAGGAGATCTGTTAGCCCCAACAAATCCTTTGAAGCTGGTAGCCAGGACTCACCCACAAAAACTGATTCAGTGTTTGATGTGAGTGACATTCCACCAGATCACAACAGCTCTCATGATGATGAAGAGTCATCTGTATATCCCATCTTTGGCACTAAAAGATCTCAGAAAAAAGGGATTTTGTCCCCACCACTGAACACTAGCACTCCTTCTGCACTGAATAGTACTCCTGCTTTTAAAGCCAAAGAGAGGAGTGCTTTGAGAAGAGAGATGAAGAAGCAGACGGATAACCAGCTCATTATTGATGCTGGTCAAAAGCAGTTTGGCGCTACCACATGCGGGTCCTGTGGAATGCTGTACAGTACAGATAGTCCTGAGGACAACTTCCAGCACACACAGTTCCATCAGCGCTTCTTGGATACCATTAAGTTTGTGGGCTGGAAAAAGGAGAGGGTTGTGGCAGAGTTCTGGGATGGAAAGATTATTCTCGTTCTTCCTGAGGATCCAAAGTATGCCACAAAAAAGGCAGAGGACGTGAGACGGATTGCAGACAGTGAATTGGGCTTTCAGCAGATCACACTCAGCAGCCCGAGCTCGGCTAAAACCTACCTGTTCATTAACAGTGACAGGATGGTTGTGGGATGTCTGGTGGCTGAGAATATTAGACAGGCCTTTCGGGTGCTGGAGCAGCCAGAGAAGCCCAAAGACGTTAACAAGGAGGATTTCATGGAGCGCAACAGAGCCTGGTGCTGCTCCACAGTGCCGGAAAAAGCCATCTGTGGCGTCAGTCGCATCTGGGTCTTCAGTCTGATGAGGAGGAAGGGCATCGCCACTCGCCTTCTAGACACTGTCAGGAATACTTTCATGTACGGGAGCCATCTGACCAAAGAAGAAATCGCCTTTTCTGACCCTACACCAGAAGGGAAGCTGTTTGCTACAAAATACTGCGAGACACCAACGTTTCTGGTGTACAACTTCATCAGTTAAAGAAAAACATCTACACTAGGTTTTAGTTTGACTGCATTTGTTAATGCTTTTGTAAGGTTTTTTTTTTTTCCCAAGAGTTTAATAGATAAAAAAAACAATTGTTAGATGTTCAAATCAAGATGTCTAATATGATAAACATCTAATTTTACGTTGATATAGAGACTGATATTTTGTCTTTAATGCTGAGTTCATTCATTCTTATTTAAGGCACAGTTTACTTCAAATACTGGCTGTTTATCGTAAGCTAGCAGGTCCTAAAGCTTCCTGTTTGGAAAATTAGGCTGTCATAATTACTTAAAGTTGGTTGTAAAATGAAAAACTTTCAGTTGAACTGCTCCTTGCTTTTGCTTTGTACATATTTTTAA

Function

symbol description
esco2 Predicted to enable acetyltransferase activity. Acts upstream of or within several processes, including bone regeneration; fin regeneration; and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Predicted to be located in chromatin. Is expressed in digestive system; heart; nervous system; otic vesicle; and pectoral fin. Used to study Roberts syndrome. Human ortholog(s) of this gene implicated in Roberts syndrome. Orthologous to human ESCO2 (establishment of sister chromatid cohesion N-acetyltransferase 2).

NR:

description
Esco2 protein

GO:

id name namespace
GO:1990523 bone regeneration biological_process

KEGG:

id description
K11268 ESCO, ECO1; N-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_02102219_02105661.mRNA True 2518 mRNA 0.43 10 2102070 2106026

Neighbor

gene id symbol gene type direction distance location
CI01000029_02069731_02079236 SCARA3 coding upstream 22814 2069293 ~ 2079256 (+)
CI01000029_02037027_02050337 REPS1 coding upstream 51660 2037027 ~ 2050410 (+)
CI01000029_01941376_01941659 NA coding upstream 159550 1941376 ~ 1942520 (+)
CI01000029_01894962_01930271 MSRA coding upstream 171799 1894962 ~ 1930271 (+)
CI01000029_01868364_01875110 NA coding upstream 226038 1868160 ~ 1876032 (+)
CI01000029_02192568_02196383 HDDC2 coding downstream 85885 2191911 ~ 2196691 (+)
CI01000029_02343103_02352351 NA coding downstream 234923 2340949 ~ 2352782 (+)
CI01000029_02427134_02429596 NA coding downstream 320072 2426098 ~ 2430095 (+)
CI01000029_02432238_02441531 NA coding downstream 326212 2432238 ~ 2441589 (+)
CI01000029_02445216_02480549 NA coding downstream 338947 2444973 ~ 2480664 (+)
G152136 NA non-coding upstream 2640 2098001 ~ 2099430 (+)
G152134 NA non-coding upstream 44904 2054416 ~ 2057166 (+)
G152093 NA non-coding upstream 130229 1880628 ~ 1971841 (+)
G152096 NA non-coding upstream 193067 1906510 ~ 1909003 (+)
G152080 NA non-coding upstream 300553 1797095 ~ 1801517 (+)
G152199 NA non-coding downstream 3567 2109593 ~ 2110032 (+)
G152201 NA non-coding downstream 8001 2114027 ~ 2114361 (+)
G152203 NA non-coding downstream 11717 2117743 ~ 2117966 (+)
G152204 NA non-coding downstream 12222 2118248 ~ 2118606 (+)
G152222 NA non-coding downstream 45154 2151180 ~ 2197893 (+)
CI01000029_01526863_01527414 NA other upstream 574171 1526754 ~ 1527899 (+)
G151495 NA other upstream 1730148 366541 ~ 371922 (+)
G151415 NA other upstream 1876825 170521 ~ 225245 (+)
G152451 NA other downstream 655568 2761594 ~ 2762939 (+)
G153475 NA other downstream 1439099 3545125 ~ 3562004 (+)
G153790 NA other downstream 2627563 4733589 ~ 4740107 (+)
G154587 NA other downstream 3164994 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 3351215 5461497 ~ 5470346 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017545 esco2 coding NC_007131.7 CM002904.2 39344889 ~ 39359154 (+)