Gene
RNA
| Item | Value |
|---|---|
| gene id | G152136 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 2098001 ~ 2099430 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU172804 | False | 803 | lncRNA | 0.34 | 2 | 2098001 | 2099430 |
| TU172805 | True | 805 | lncRNA | 0.34 | 2 | 2098001 | 2099430 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000029_02069731_02079236 | SCARA3 | coding | upstream | 18745 | 2069293 ~ 2079256 (+) |
| CI01000029_02037027_02050337 | REPS1 | coding | upstream | 47591 | 2037027 ~ 2050410 (+) |
| CI01000029_01941376_01941659 | NA | coding | upstream | 155481 | 1941376 ~ 1942520 (+) |
| CI01000029_01894962_01930271 | MSRA | coding | upstream | 167730 | 1894962 ~ 1930271 (+) |
| CI01000029_01868364_01875110 | NA | coding | upstream | 221969 | 1868160 ~ 1876032 (+) |
| CI01000029_02102219_02105661 | ESCO2 | coding | downstream | 2640 | 2102070 ~ 2106026 (+) |
| CI01000029_02192568_02196383 | HDDC2 | coding | downstream | 92481 | 2191911 ~ 2196691 (+) |
| CI01000029_02343103_02352351 | NA | coding | downstream | 241519 | 2340949 ~ 2352782 (+) |
| CI01000029_02427134_02429596 | NA | coding | downstream | 326668 | 2426098 ~ 2430095 (+) |
| CI01000029_02432238_02441531 | NA | coding | downstream | 332808 | 2432238 ~ 2441589 (+) |
| G152134 | NA | non-coding | upstream | 40835 | 2054416 ~ 2057166 (+) |
| G152093 | NA | non-coding | upstream | 126160 | 1880628 ~ 1971841 (+) |
| G152096 | NA | non-coding | upstream | 188998 | 1906510 ~ 1909003 (+) |
| G152080 | NA | non-coding | upstream | 296484 | 1797095 ~ 1801517 (+) |
| G152099 | NA | non-coding | upstream | 398961 | 1698752 ~ 1699040 (+) |
| G152199 | NA | non-coding | downstream | 10163 | 2109593 ~ 2110032 (+) |
| G152201 | NA | non-coding | downstream | 14597 | 2114027 ~ 2114361 (+) |
| G152203 | NA | non-coding | downstream | 18313 | 2117743 ~ 2117966 (+) |
| G152204 | NA | non-coding | downstream | 18818 | 2118248 ~ 2118606 (+) |
| G152222 | NA | non-coding | downstream | 51750 | 2151180 ~ 2197893 (+) |
| CI01000029_01526863_01527414 | NA | other | upstream | 570102 | 1526754 ~ 1527899 (+) |
| G151495 | NA | other | upstream | 1726079 | 366541 ~ 371922 (+) |
| G151415 | NA | other | upstream | 1872756 | 170521 ~ 225245 (+) |
| G152451 | NA | other | downstream | 662164 | 2761594 ~ 2762939 (+) |
| G153475 | NA | other | downstream | 1445695 | 3545125 ~ 3562004 (+) |
| G153790 | NA | other | downstream | 2634159 | 4733589 ~ 4740107 (+) |
| G154587 | NA | other | downstream | 3171590 | 5271020 ~ 5271535 (+) |
| CI01000029_05461497_05468985 | BATF | other | downstream | 3357811 | 5461497 ~ 5470346 (+) |
