RNA id: TU176144


Basic Information

Item Value
RNA id TU176144
length 320
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G155121
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6381467 ~ 6381786 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTACAAAAAAAAATACTGTTCTTGTGAACTTTTTATTAATCGAATAATTCACAAATCAACATTGATAATAATAAATGTTTCTTAAGCATCAAATCAGCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGCATCACAGGAATAAAATACATTTTAAAATATATTGACAAAGAAAACTGTTATTTTAAATTGTAATAATATTTCACAATATTACTGTATTTTTGAGCAAATAAATGCAGCCTTGGTGAGCAGAAGAGACTTCAAAAACATTAACAAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176129 lncRNA upstream 38696 6342548 ~ 6342771 (+) True G155110
TU176104 lncRNA upstream 46516 6323091 ~ 6334951 (+) True G155087
TU176081 lncRNA upstream 118993 6262175 ~ 6262474 (+) True G155072
TU176069 lncRNA upstream 134824 6246338 ~ 6246643 (+) True G155061
TU176066 lncRNA upstream 135492 6245683 ~ 6245975 (+) True G155060
TU176147 lncRNA downstream 2978 6384764 ~ 6385040 (+) True G155124
TU176152 lncRNA downstream 9990 6391776 ~ 6391993 (+) True G155128
TU176166 lncRNA downstream 50162 6431948 ~ 6432805 (+) True G155142
TU176186 lncRNA downstream 132941 6514727 ~ 6514978 (+) True G155162
TU176210 lncRNA downstream 196489 6578275 ~ 6578494 (+) True G155186
CI01000029_06347167_06348123.mRNA mRNA upstream 33298 6346660 ~ 6348169 (+) True CI01000029_06347167_06348123
CI01000029_06305668_06307332.mRNA mRNA upstream 73792 6305245 ~ 6307675 (+) True CI01000029_06305668_06307332
CI01000029_06294088_06295613.mRNA mRNA upstream 85441 6293019 ~ 6296026 (+) True CI01000029_06294088_06295613
CI01000029_06214396_06222690.mRNA mRNA upstream 158732 6212878 ~ 6222735 (+) True CI01000029_06214396_06222690
CI01000029_06086495_06092753.mRNA mRNA upstream 287608 6086495 ~ 6093859 (+) True CI01000029_06086495_06092753
CI01000029_06443365_06447942.mRNA mRNA downstream 61579 6443365 ~ 6447942 (+) True CI01000029_06443365_06447942
CI01000029_06453008_06476863.mRNA mRNA downstream 71222 6453008 ~ 6477090 (+) True CI01000029_06453008_06476863
CI01000029_06494856_06495812.mRNA mRNA downstream 112605 6494391 ~ 6495847 (+) True CI01000029_06494856_06495812
CI01000029_06724205_06734079.mRNA mRNA downstream 342419 6724205 ~ 6735582 (+) True CI01000029_06724205_06734079
CI01000029_06775631_06791278.mRNA mRNA downstream 393845 6775631 ~ 6791346 (+) True CI01000029_06775631_06791278
TU176089 other upstream 93069 6282685 ~ 6288398 (+) True G155079
TU175455 other upstream 911121 5457241 ~ 5457472 (+) True G154531
TU175511 other upstream 1109932 5271020 ~ 5271535 (+) True G154587
TU174646 other upstream 1641360 4733589 ~ 4740107 (+) True G153790
TU174291 other upstream 2819463 3545125 ~ 3562004 (+) True G153475
TU176095 other downstream 49749 6431535 ~ 6490294 (+) False G155083
TU176099 other downstream 49749 6431535 ~ 6490294 (+) True G155083
TU176307 other downstream 524402 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176602 other downstream 1253047 7634833 ~ 7637834 (+) True G155522
TU176707 other downstream 1549694 7931480 ~ 7932177 (+) True G155627

Expression Profile