RNA id: CI01000029_06666877_06679215.mRNA


Basic Information

Item Value
RNA id CI01000029_06666877_06679215.mRNA
length 3194
RNA type mRNA
GC content 0.49
exon number 15
gene id CI01000029_06666877_06679215
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6666830 ~ 6679215 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACGGTCAGGCGTTTGGCAGCGGCCGCTCTCTTAACACTCGCAGTACTGACATCAGTGAGAGCTCAAGTAATGCCTCCATCAGACTTGAAGTTTAAGATTTTAAATGAAAACACAGTGCAAATGATATGGAAGCAACCGCTGTCAAGGATTGAGGGCTTCAGAGTACAAGTGACATCGGGTGCAGAAGAGCCTGTTAAGGAATTCTCACTTCCTCCATCCTCAACCAAAACCTCCATCAGAGATTTGACCCCCGATGTGGATTATGTTGTTACGATAACTTCATATTCTGGATCTGAGGAGAGTATACCAATCTCTGGACAGATTACAATCCAATCAAGTGGTTTTGAAGTAGGTACCAGGAAGCCCCAGGTCTCAGATGCAGTCAAATGCTCAGTAAGTGCCATTGCTGATCTTGTCTTCCTGGTGGACGGTTCTTGGAGTGTCGGGCGGGAAAATTTTAAATTCATCCGCAGCTTCATAGCAGCCATGGCAGGCGCGTTTGACCTTGGAGAGGACAAGACTAGAGTGGGCGTGGTTCAGTACAGCACAGACACCAGAACTGAGTTTAACCTTAACCAGTACTTCAAACGGGCCGAGCTGCTCAGAGCCATTAACAATCTGCCATACAAGGGCGGGAACACCATGACAGGCGAAGCCCTGGACTACCTGCTGAAAAACATGTTCACAGAGACCGCCGGTGCTCGTAAGGGATTCCCCAGAGTAGCCGTAGTTATCACGGATGGGAAATCTCAGGACCCTGTTGAAGGTTACGCCAAGAGGTTGAAGAATGCTGGAGTTGAAATCTTCACTTTGGGGATCAAAGAAGCAGATGAGGAAGAGTTGAAACAAATGTCTTCAACGCCCTACAGAACACACGTGTACACGGTGCCAAACTTCGACATGATCAAAGCTGTGGAGAAATCACTCATCACGCAGGTGTGCAACAGTGTGGATGACCAGCTCAGCTCGCTGGCTAGCGGCGAGGAAGTCGTTGAACCAGCGTCAAACTTGCAAGTCACAGAGGTTGCATCCAAGTCAATGCGGGTGACGTGGGATGCATCTATAGGGGAAGTGACTGGATACAAGGTGCAGATGGTTCCCATGTTGGCTGGCAGCAAACGTCAGGAGCTGTACGTTGGGCCGACTCAGACCTCTGTGAATGTGAGAGACTTGTCCCCTGATACTGAGTACGAAATCAGCCTGTTTGCACTCAAAGGTCTGACGCCTAGCGAGGCAGTTATGGCAATGGAGAAAACCCAGCCTTTAAAATTATCCTTAGAATGTTCTCTTGGTGTGGATGTACAAGCCGACGTTGTTCTCCTGGTCGACGGTTCCTACAGTATCGGTCTTGCGAACTTCGCTAAAGTTCGAGCTTTCTTGGAAGTTCTGGTCAACACCTTTGACATTGGTGCGGAGAAAGTTCAAATCAGCTTGGTCCAGTACAGCAGAGACCCACACACTGAATTCTACCTGAACACCCACCACGATCTGAGCGCAGTGGTCAAAGCCGTGAGAACGTTCCCCTACCGTGGTGGCTCCACGAACACCGGCAAAGCTATGACGTATGTGAGAGAGAGGATTTTTGTTCCAACCAGAGGCGCTCGTGCAAATGTACCTCGTGTTACGATTCTGATCACCGATGGGAAGTCCTCGGATGCTTTCAAAGACCCGGCAGCTAAGCTTAGGAACTCGGATGTAGAGATTTTCGCAGTGGGCGTGAAAGATGCTGTCCGCTCGGAGCTGGAGGCGATTGCTAATCCTCCAGTGGAGACCCACGTGTACACCGTAGAGGACTTTGATGCTTTCCAGAGGATTTCTGACGAGCTAACCCAGTCCATCTGTCTGAGAATTGAGCAAGAGCTTCTGAACATCAAGAAGAGAAGTCTGATTGCACCCAGGTCTCTGACCTTCTCAGAGGTGACCTCCAGGAGTTTCCGAGCTTCTTGGGTAACAGATGCCGTGGATGTGCAGTCCTATCTGGTGCAATACAAGCCTGATGCTGACACAGAAGTGGGCTACATCTCCGTTTCTGTGCCGGGAGACACCACTACGGCTGTCTTACATCACCTTACTCCAGTCACAAAGTATGAGGTCAAGGTTTACGCCCAATACGAGAAGGGAGAAAGCTTTCCTCTATCAGACTTTGAGACCACACTAGAAGAACAAGGATCCGTGAACAACCTGAGGGTGTCCGAGGAGACCACAAATAGTTTCCGTGTCTCATGGGGGGAGGCTCCTGGTCCAGTAGTGCGGTATAAACTCACATACTATGGTCCACCTCGAGGGGATATAACGTTAAAAGAAACTGCAACAGTTGGCCCTGAGACCACCATAGTTCTGCAGCCACTTCAATCAGCTACGAAATACCGTGTCTCTGTGGCAGCCGAATACCCATCAGGTGTTGGACCTCAGATGCAGATTGATGGAACAACCAAAGAAGAACGTGGCTTGCCGAGAGACCTGCGTGTTTTTCAAGAGACGGTGTCATCCATGCAGCTGTCCTGGGCCGCGGCACCAGGAAGAGTCATTCAGTACCGCGTGTTCTACCAGCCCACAGAAGGTGGTGAGATGAAGGAAGTGACTGTTAGGGGGGACGCCACAGCGACCACGCTGAAGAATCTCCAGCCGGGCACAGAGTACCAGCTTGCTGTGAGGGCACGCTACTCCTCAGGATTAGAAGAGCCACTCCAGGGAACTGGAACCACACTGGAAGCCCAGATAAACAGCTCACAGGTCTTCTGGGGTTTCAGAAGACCAAATCTTAAGCTACAGTATCCTCTAATGAAATTACCAGAAGCAAAGCTTGCCCAAGATCTTAAATCACAGAATTCCGGATATGCATTAAGGAAGAGCATGAAAGATTTCCGTTCTGTCCCCAGTCTGATGCAGAAGCGTGTAATGCGTTCAAGCTGGTCTTGCTGTCCGGCCCATGAACCCGGAGATGTACGTAAAGCACAGATGAAGGGGACAACCGAAAGCTCTTTCAGCACCTGCGCTTTCCCGGTGATTGACACGAGGTTAAACTTCAAAAACACTGCAGAAAATTTACTGCATGTGTATGGCCTGTCTCAGCTTTGGATTTTGGAGAAGCATGGGATGCTGGATTGGCTTTTTGAATGGAATTGCATCTTTAAATGGATATAAAAGATCATTTGAATTTCAAGGCTCTTTTAAAGGCAGAGTCCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177533 lncRNA downstream 70130 6596489 ~ 6596700 (-) True G156362
TU177530 lncRNA downstream 88337 6578261 ~ 6578493 (-) True G156359
TU177529 lncRNA downstream 88646 6577901 ~ 6578184 (-) True G156358
TU177528 lncRNA downstream 90844 6575727 ~ 6575986 (-) True G156357
TU177516 lncRNA downstream 127509 6538523 ~ 6539321 (-) True G156345
TU177486 lncRNA upstream 3476 6682691 ~ 6687634 (-) False G156322
TU177487 lncRNA upstream 3476 6682691 ~ 6687634 (-) False G156322
TU177488 lncRNA upstream 3476 6682691 ~ 6687634 (-) True G156322
TU177503 lncRNA upstream 9537 6688752 ~ 6689050 (-) True G156332
TU177497 lncRNA upstream 59318 6738533 ~ 6741055 (-) True CI01000029_06739098_06769987
CI01000029_06606850_06665941.mRNA mRNA downstream 680 6606850 ~ 6666150 (-) True CI01000029_06606850_06665941
CI01000029_06486658_06492567.mRNA mRNA downstream 174263 6486470 ~ 6492567 (-) True CI01000029_06486658_06492567
CI01000029_06449255_06451786.mRNA mRNA downstream 215044 6449112 ~ 6451786 (-) True CI01000029_06449255_06451786
CI01000029_06431763_06439215.mRNA mRNA downstream 227615 6431720 ~ 6439215 (-) True CI01000029_06431763_06439215
CI01000029_06410464_06420256.mRNA mRNA downstream 246574 6410022 ~ 6420256 (-) True CI01000029_06410464_06420256
CI01000029_06689615_06698873.mRNA mRNA upstream 10322 6689537 ~ 6698873 (-) True CI01000029_06689615_06698873
CI01000029_06719634_06722376.mRNA mRNA upstream 40312 6719527 ~ 6723172 (-) True CI01000029_06719634_06722376
CI01000029_06739098_06769987.mRNA mRNA upstream 59499 6738714 ~ 6769987 (-) False CI01000029_06739098_06769987
CI01000029_06798103_06806327.mRNA mRNA upstream 118825 6798040 ~ 6806846 (-) True CI01000029_06798103_06806327
CI01000029_06832914_06833074.mRNA mRNA upstream 153494 6832709 ~ 6833074 (-) False CI01000029_06832914_06833074
TU175317 other downstream 1679405 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 1679405 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 2189618 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 2959578 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 3380276 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 491152 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 687112 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 687112 7366327 ~ 7369547 (-) False G156495

Expression Profile