RNA id: CI01000029_06719634_06722376.mRNA


Basic Information

Item Value
RNA id CI01000029_06719634_06722376.mRNA
length 1155
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000029_06719634_06722376
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6719527 ~ 6723172 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCCGTGTCCTGACCTCTGCGAAGAGACACCAAAAGGGCTTTAAATAACAGCACACATGCATATATAAATCTCAACGAGGTACTGATTGTTTGTGTATATTTAATAGTAAATATGAAGAATGTGCATAAATAAATACAAGAGTTCAGCACTTTCACACTGGGAAAACTGGCTAAATAACTCATTAACTGACAACTATATTACTATTTAAACTATCTAAACAGGTAAACAAGCCTATCTAGATTTAAACTACATACATTTGTCGATTAAAATGAAACCACGAAGTGCGTTTTTAACAAGATAAACAAAACGAACTAAATTGTCCAGGCGGCTAGTTAGCTTAGCACGAGCCAGCACAAAACTGACTCTCCTCATGGATAAAATCACATTTCTTACCTGGAATGAGGAAAATACACAATATCTCAGCGCAGCAGATCATTTAATGCGCTCTGTCGGGTGATGAAGATGATATTTTATGTGATGTTGTGAGGAAGACTCGCCCTGACTGACTGACTGACTGTCTTTGTCTGACTGACAGCAGCCGCGCTGACGTCACACCGCGCGCCTCGGACAGACTCGGGAAATGTAGTTAATTGCGAACGCGCCGCCATATTGTGTTTATGTGATTGCGCGGTTGAATGATGTGTTTCTCTTGCTGCTTGTTTTCTTTTTACAGTAAGCCTAAAGATAAGACCCGGTAAGCAACCGGGAGTGAATGTGAAAGACGAACGGTTTCCTTTAAAATAGTTAAATCCCTGTTTAAAGTTCGTCTTATTTGCATAAACAAACCGTTGCTTGATGGCATCTGAGGAGGATAAACATGATATGGACATTATATCTTCAGATTCACAGAAAAGCAGCATTTATGTGACCAAGATTGACAGATTTACATCTGTGGGTGATGGTGTGCATATTCTGAGGTTTTGTCATAACATATTGCACTTGTTCTGGACTTCTCTGCCAGTTCGTTCAGGACATTGTGAAGGCAACAGAATCGTTCTGCTCGCTCAGACTTGGATAGAGGACAATACAGTTCTCACAGACCGCTAGTGCTAGGACAATCTCTGTAGGAACAGAAGACAACGTAAAGGCAGGACCGCAAGAAGGAGAAGGAGCGTTTTTGTGATGGTTTATTCCAGGAACAGATGGACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177503 lncRNA downstream 30477 6688752 ~ 6689050 (-) True G156332
TU177486 lncRNA downstream 31893 6682691 ~ 6687634 (-) False G156322
TU177487 lncRNA downstream 31893 6682691 ~ 6687634 (-) False G156322
TU177488 lncRNA downstream 31893 6682691 ~ 6687634 (-) True G156322
TU177533 lncRNA downstream 122827 6596489 ~ 6596700 (-) True G156362
TU177497 lncRNA upstream 15361 6738533 ~ 6741055 (-) True CI01000029_06739098_06769987
TU177551 lncRNA upstream 37892 6761064 ~ 6761314 (-) True G156380
TU177492 lncRNA upstream 63241 6786413 ~ 6833696 (-) False G156323
TU177491 lncRNA upstream 108682 6833628 ~ 6833696 (-) True G156323
TU177489 lncRNA upstream 109477 6833628 ~ 6833696 (-) False G156323
CI01000029_06689615_06698873.mRNA mRNA downstream 20654 6689537 ~ 6698873 (-) True CI01000029_06689615_06698873
CI01000029_06666877_06679215.mRNA mRNA downstream 40312 6666830 ~ 6679215 (-) True CI01000029_06666877_06679215
CI01000029_06606850_06665941.mRNA mRNA downstream 53377 6606850 ~ 6666150 (-) True CI01000029_06606850_06665941
CI01000029_06486658_06492567.mRNA mRNA downstream 226960 6486470 ~ 6492567 (-) True CI01000029_06486658_06492567
CI01000029_06449255_06451786.mRNA mRNA downstream 267741 6449112 ~ 6451786 (-) True CI01000029_06449255_06451786
CI01000029_06739098_06769987.mRNA mRNA upstream 15542 6738714 ~ 6769987 (-) False CI01000029_06739098_06769987
CI01000029_06798103_06806327.mRNA mRNA upstream 74868 6798040 ~ 6806846 (-) True CI01000029_06798103_06806327
CI01000029_06832914_06833074.mRNA mRNA upstream 109537 6832709 ~ 6833074 (-) False CI01000029_06832914_06833074
CI01000029_06921800_06922750.mRNA mRNA upstream 198109 6921281 ~ 6923115 (-) True CI01000029_06921800_06922750
CI01000029_07332828_07336542.mRNA mRNA upstream 609123 7332295 ~ 7336542 (-) True CI01000029_07332828_07336542
TU175317 other downstream 1732102 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 1732102 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 2242315 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 3012275 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 3432973 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 447195 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 643155 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 643155 7366327 ~ 7369547 (-) False G156495

Expression Profile