RNA id: TU172158


Basic Information

Item Value
RNA id TU172158
length 1676
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G151553
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 181378 ~ 183092 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAGTTAATGAGCTATGGTTTCGTGTTTCCTATGGTGGTTTCGTCTCGATCATACTAACGGTTTAGAAGATATTCACAAAAGTTTATTTATTTATTTATTTATTTTTTAAGCGCTAAATCGCCAACGTTGCACAAACTATAAGGCGAAACCTAACAGGTTCGGTATTGTTGGACTTGGCAAAGATTCAGGAGTCTAAGGACTTGACTCCCATGAAAATAAGTCGACCACACCCAAAGTTATATTCATTTTCAGCCAAAACAGACAATTTACCATTGAAAACATATGGTTTTTAAAGCATTTTAACAGTTATAGCGCCAACTATTGTCTAATCTCCATAAAAGTTGGCTTGTTTCTTTAGAGTCATATGCTGCATGTGCTCACTTTGAGTTTTAGTTTAGGATTTATTAGAGTATATTTTGCCACGCCCATTTACTAAATGACCCTGTTATAGCTATCCAAAGGGTAGCTATAACACTTTTTTTAAATAATTATTGATCAAATCGCTTGACCCCCTAAAAATCCTTACAATTACAATAGGGTTTCAGCACTACGTGCTTGAACCCCTAAAAATTAAGCAATAGCCACCTCACCACTGACAAAATGGTGGGTGATGAGTACCATATTTTTCTCCATGTGATGGCAGTGGTGTTCTACTGAAATGTAAGCTACTATCGACATTGGCTACAATATTGAGTGGGTCCTGGGTGAAACAGTACAAAGTTCAGGTTGTACATACATGCAATTGCATTGGGTGATTTTAACAAACTAGCAGACCTTTTTTTTTTTTTTTTTGGGATCGCATCGCATCTGATCTTGTGGTGTTGACTTTTTTGGTCCTATTACCCTGCTGAAAAATCCAGTATAAACCAGCATGGATTCCATGATGGTCCAGGCTGGTATAGTGCTGGTCTAGCTGGTGGACCAGCATATTCATGCTGTTCTCAAGCAAAACAGAGAGCTGGTGAAGCTGGTTCACCAGCATCATCTTGTGGGGTTGTGAGTAGGCCAGTTGTCTGTGTTATACCTCTGAAAAGAGGGAGATGAACAATCATAAAACTTGCATAACAATTGACAATAAATTTTACAAAACAGCATCAATGGTCTTCTCTTCTCCTTTCACACATTTTTACAATTTACCATAAAGCTATTAATTATACAATTTTTAGTTAATTACAAAATCTTCAGTTATTTATAGATAATACATTAATTAATACATATTATATAGCTTTTAAGGAATATCTGATACAATTCAAAATAACATGTAAATACTCTTTAAATAACTGTCTCGTCTTGAAAATACATCAATATCTTGGATTCTCTGTAATTCACTTTTCACATTTCTCAATATATTCACCCTTTTCAGAAATTCAACCAATTGGCACTTAATTAACAACATTAAACATTAAATACAAAATACGCAAATGTTAAACACTCTAGGCTACATTATTATGTACCTATTATGTAGGCCTCGCGCCATCTCACGGCTGAGCTCGTGCATCTCTAAACTAGTACACTTTTTAAACATCTTTAACAAAATGCAGTCAGTATCATTAAAACATCTACACACTCTAAAACATTATATCATTAGAATACCTGAAAAGAGGGAGATGAACAATCATAAAAACTTGCAAATGTTTCCCCGCTGCGAACTTTATGTAGAATGAAGAAACCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172121 lncRNA downstream 47295 133136 ~ 133145 (-) True G151519
TU172159 lncRNA upstream 168 183260 ~ 187937 (-) True G151554
TU172209 lncRNA upstream 124756 307848 ~ 308204 (-) True G151603
TU172211 lncRNA upstream 127434 310526 ~ 310749 (-) True G151605
TU172216 lncRNA upstream 133543 316635 ~ 316880 (-) True G151610
TU172219 lncRNA upstream 135425 318517 ~ 326627 (-) True G151612
CI01000029_00076210_00177393.mRNA mRNA downstream 2473 75630 ~ 178905 (-) False CI01000029_00076210_00177393
CI01000029_00057245_00073837.mRNA mRNA downstream 107541 57245 ~ 73837 (-) True CI01000029_00057245_00073837
CI01000029_00031332_00056219.mRNA mRNA downstream 125159 31025 ~ 56219 (-) True CI01000029_00031332_00056219
CI01000029_00000004_00021646.mRNA mRNA downstream 158823 4 ~ 22555 (-) True CI01000029_00000004_00021646
CI01000029_00191495_00216075.mRNA mRNA upstream 7103 190195 ~ 216191 (-) True CI01000029_00191495_00216075
CI01000029_00238295_00240090.mRNA mRNA upstream 54916 238008 ~ 240090 (-) True CI01000029_00238295_00240090
CI01000029_00351260_00374024.mRNA mRNA upstream 168168 351260 ~ 374024 (-) True CI01000029_00351260_00374024
CI01000029_00400646_00402700.mRNA mRNA upstream 217227 400319 ~ 403709 (-) True CI01000029_00400646_00402700
CI01000029_00520844_00524249.mRNA mRNA upstream 336742 519834 ~ 524342 (-) True CI01000029_00520844_00524249
TU173481 other upstream 1109157 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 2409074 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 3065685 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 3523131 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 4277251 4472400 ~ 4477212 (-) True G154201

Expression Profile