RNA id: TU173283


Basic Information

Item Value
RNA id TU173283
length 303
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G152557
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 525587 ~ 525889 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTGGGAAGGCTTTCCACAAGGTTTAGGAGTGTGTTTATGGGAATTTTTGACCATTCTTCTAGAAGTGCATTTGTGAGGTCAGGCACTGATGTTGGACGAGAAGGCCTGGCTCGCAGTCTTCGCTCTTATTCATCCCAAAGGTGTTCTAACGGGTTGAGGTCAGGACTCTGTGCAGGCCAGTCAAGTTCCTCCACACCAAACTCACTCATCCTTGTCTTTATGGACCTTGCTTTGTGCACTGGTGCGCAGTCATGTTGGAACAGGAAGGGGCCATCCCCAAACTGTTCCCACAAAGTTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173282 lncRNA downstream 350 524840 ~ 525237 (-) True G152556
TU172233 lncRNA downstream 176690 341511 ~ 348897 (-) True G151624
TU172219 lncRNA downstream 198960 318517 ~ 326627 (-) True G151612
TU172216 lncRNA downstream 208707 316635 ~ 316880 (-) True G151610
TU172211 lncRNA downstream 214838 310526 ~ 310749 (-) True G151605
TU173275 lncRNA upstream 123987 649876 ~ 651768 (-) True G152551
TU173515 lncRNA upstream 552369 1078258 ~ 1081280 (-) True G152759
TU173532 lncRNA upstream 650880 1187612 ~ 1189153 (-) True G152776
TU173477 lncRNA upstream 827647 1354901 ~ 1355173 (-) True G152721
TU173686 lncRNA upstream 913620 1439509 ~ 1439718 (-) True G152918
CI01000029_00520844_00524249.mRNA mRNA downstream 1245 519834 ~ 524342 (-) True CI01000029_00520844_00524249
CI01000029_00400646_00402700.mRNA mRNA downstream 121878 400319 ~ 403709 (-) True CI01000029_00400646_00402700
CI01000029_00351260_00374024.mRNA mRNA downstream 151563 351260 ~ 374024 (-) True CI01000029_00351260_00374024
CI01000029_00238295_00240090.mRNA mRNA downstream 285497 238008 ~ 240090 (-) True CI01000029_00238295_00240090
CI01000029_00191495_00216075.mRNA mRNA downstream 309396 190195 ~ 216191 (-) True CI01000029_00191495_00216075
CI01000029_00532933_00536043.mRNA mRNA upstream 6756 532645 ~ 536758 (-) True CI01000029_00532933_00536043
CI01000029_00553198_00596492.mRNA mRNA upstream 26792 552681 ~ 596492 (-) True CI01000029_00553198_00596492
CI01000029_00653876_00662303.mRNA mRNA upstream 127725 653614 ~ 662874 (-) True CI01000029_00653876_00662303
CI01000029_00671340_00676497.mRNA mRNA upstream 145302 671191 ~ 676497 (-) True CI01000029_00671340_00676497
CI01000029_00740836_00741866.mRNA mRNA upstream 214545 740434 ~ 741866 (-) True CI01000029_00740836_00741866
TU173481 other upstream 766360 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 2066277 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 2722888 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 3180334 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 3934454 4472400 ~ 4477212 (-) True G154201

Expression Profile