RNA id: TU173275


Basic Information

Item Value
RNA id TU173275
length 1893
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id G152551
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 649876 ~ 651768 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGCTAATAATGAGCTGGCGTTCCGACGTAGAACCCGGAAGTGCTGCACTGTGTTTACAACATCAACAGCGTAGGAGACTGACTTACTTTTATTCATTTCGAGGAATACTGAATTTATTTTTGTGCAAGTGAGATTGCAAGCATTCTCACATTTAGTCTAAAACTACAATAACCATCATGTTTACACAGCGCACACAACACCTCTCCTCACTCCCGATTTCTCTCAACATAGGTTCAGGAGAGGTGTCACTCAGTAAATAAGAAAAAATAATTTGCTTTACTTATTTGAAAAAGTAACTCAGATATTTTGTTGTAAATTTAAAAGTAATGCGTTACTTAACTCATTACTTGAAGAAAGTAATCTGATTACGTAACTCAAGTTACTTGTAATGCGTTACCCCCAACACCGCTCGAGACTCTGCATTCTTTCCATTTCGTAGAGTTGTCTCGCTTTTGTAAACGCAAGAAACATGGACTTCTTTTATTGTTGCGCTGCTTCTCGCGTGTCTAGTATTCAGTTCGATTCCGTTATGATCCGTCTTGCTGTGTTTGAAAGATGTTTGAAAAATACTTTGTGTCCAGTTTTTTCAGCGTATCATGCGATGAACATCATATTTTTAAGACACAATTTCAAGTTAAACTTTTTAAACGCATCCTTACATTCCATTGCAATCCTTTGTTTTCAAACGCAAGTACGCATCCTGTGTGAATTAACGGCCCCAAGGGTTAGTTGAGTGATGACCACTCTACATTTCATAAGATCTTCACGCCTTTAGAAATATATTGACAGCTATGAATTATGACGTCAATTTTTTAGCCTAGCCTCGTCATTTTTAAACGTCTGCTACGGAGCAGATGTGTGTTCAGTCATTCTTTAACAAACAATGACACTATTTTTAATCCATCCAGTTCAATCTTTTAGATTAATAATGACATTTATTTCAGGTATGGAAATAAGAAATTAGTTTGGTATTTAGTAACTTGAGCATTCCAATCACATGGTCCAATACAGATGATCCCTTTAATATAGAATGTAAACAGCTTGATTTCTCATGTTCTGTTATTATATTCATTGTGTACAAGATATTGTTTTTAACATTATTAGTGTCATAATGTAGTATGCAAAACTGGATCAATTGCGTGAAGAGCTGCCATCTGTCATACCTGAAATTACTTGAATTATGTGTGTAAAATGCTTTAAAACACCTGAACTTTTAATAGTATAGAGCACTTGAATTTACAGACTGAATATTGCATCTGAATTGTTCCATTGATTACCACATCAGAGTGTCTTAATTCAGAATGCATTTCCCCTTTGTGTGATGAAAGCAGGAATAAATTACCACAAGCACATTTTAAATCTGCCTACAACTGGACAAATTGTCAAGGCACAGGCAGGGACTGAACTATTATAAATGATGCTGTCCTACAATCTAAAACTGTGTAACCCTAAGAGAATCTACCTTGGGGGGCCTATGCGGAGAAAAAAACACTGAGTTCTACTGTGAGAATTGTTTTTTATGACATTTTTAAAACACATTTTATATGGAAAGCACAACAATTGTTAGTGCAAAATAAATATTTAAATACATAATATTTATGTTTATATAAATATTATGAGAATATTTATTTTTATGAAAGTTTTCCTATTTTATTTTCCCAAATATGCATTCCAGAATACCATAAGCAATGGAGTCTGACCAGCTTCATTGCTTTGGGTGTGCCTTCACTTAGTGTCTCTTTATTTGATTGGTCGTGAAAGTTCTCACCAAGAACTTTCCATTATGTGTAAAAGAGGCAGTTGCATTGGCCTGCAGAGCGTCTATAGCGATGATCAATTTTATTTAAATAGATGAATGCAAAATAGAGGAACCGATAGCCACTCTAGTGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173283 lncRNA downstream 123987 525587 ~ 525889 (-) True G152557
TU173282 lncRNA downstream 124639 524840 ~ 525237 (-) True G152556
TU172233 lncRNA downstream 300979 341511 ~ 348897 (-) True G151624
TU172219 lncRNA downstream 323249 318517 ~ 326627 (-) True G151612
TU172216 lncRNA downstream 332996 316635 ~ 316880 (-) True G151610
TU173515 lncRNA upstream 426490 1078258 ~ 1081280 (-) True G152759
TU173532 lncRNA upstream 525001 1187612 ~ 1189153 (-) True G152776
TU173477 lncRNA upstream 701768 1354901 ~ 1355173 (-) True G152721
TU173686 lncRNA upstream 787741 1439509 ~ 1439718 (-) True G152918
TU173702 lncRNA upstream 803024 1454792 ~ 1455019 (-) True G152933
CI01000029_00553198_00596492.mRNA mRNA downstream 53384 552681 ~ 596492 (-) True CI01000029_00553198_00596492
CI01000029_00532933_00536043.mRNA mRNA downstream 113118 532645 ~ 536758 (-) True CI01000029_00532933_00536043
CI01000029_00520844_00524249.mRNA mRNA downstream 125534 519834 ~ 524342 (-) True CI01000029_00520844_00524249
CI01000029_00400646_00402700.mRNA mRNA downstream 246167 400319 ~ 403709 (-) True CI01000029_00400646_00402700
CI01000029_00351260_00374024.mRNA mRNA downstream 275852 351260 ~ 374024 (-) True CI01000029_00351260_00374024
CI01000029_00653876_00662303.mRNA mRNA upstream 1846 653614 ~ 662874 (-) True CI01000029_00653876_00662303
CI01000029_00671340_00676497.mRNA mRNA upstream 19423 671191 ~ 676497 (-) True CI01000029_00671340_00676497
CI01000029_00740836_00741866.mRNA mRNA upstream 88666 740434 ~ 741866 (-) True CI01000029_00740836_00741866
CI01000029_00743128_00743689.mRNA mRNA upstream 91334 743102 ~ 743689 (-) True CI01000029_00743128_00743689
CI01000029_00744455_00749027.mRNA mRNA upstream 92516 744284 ~ 749027 (-) True CI01000029_00744455_00749027
TU173481 other upstream 640481 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 1940398 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 2597009 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 3054455 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 3808575 4472400 ~ 4477212 (-) True G154201

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU427222 True 4935 lncRNA 0.35 2 NW_019172855.1 1375166 ~ 1380141 (-)