Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU173515 |
| length | 947 |
| lncRNA type | antisense_over |
| GC content | 0.42 |
| exon number | 5 |
| gene id | G152759 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 1078258 ~ 1081280 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU173275 | lncRNA | downstream | 426490 | 649876 ~ 651768 (-) | True | G152551 |
| TU173283 | lncRNA | downstream | 552369 | 525587 ~ 525889 (-) | True | G152557 |
| TU173282 | lncRNA | downstream | 553021 | 524840 ~ 525237 (-) | True | G152556 |
| TU172233 | lncRNA | downstream | 729361 | 341511 ~ 348897 (-) | True | G151624 |
| TU172219 | lncRNA | downstream | 751631 | 318517 ~ 326627 (-) | True | G151612 |
| TU173532 | lncRNA | upstream | 95489 | 1187612 ~ 1189153 (-) | True | G152776 |
| TU173477 | lncRNA | upstream | 272256 | 1354901 ~ 1355173 (-) | True | G152721 |
| TU173686 | lncRNA | upstream | 358229 | 1439509 ~ 1439718 (-) | True | G152918 |
| TU173702 | lncRNA | upstream | 373512 | 1454792 ~ 1455019 (-) | True | G152933 |
| TU173704 | lncRNA | upstream | 375685 | 1456965 ~ 1457196 (-) | True | G152935 |
| CI01000029_00994197_01001813.mRNA | mRNA | downstream | 76445 | 992790 ~ 1001813 (-) | True | CI01000029_00994197_01001813 |
| CI01000029_00805246_00806809.mRNA | mRNA | downstream | 271449 | 804913 ~ 806809 (-) | True | CI01000029_00805246_00806809 |
| CI01000029_00765372_00789010.mRNA | mRNA | downstream | 289248 | 765253 ~ 789010 (-) | True | CI01000029_00765372_00789010 |
| CI01000029_00744455_00749027.mRNA | mRNA | downstream | 329231 | 744284 ~ 749027 (-) | True | CI01000029_00744455_00749027 |
| CI01000029_00743128_00743689.mRNA | mRNA | downstream | 334569 | 743102 ~ 743689 (-) | True | CI01000029_00743128_00743689 |
| CI01000029_01109371_01118517.mRNA | mRNA | upstream | 27693 | 1108973 ~ 1119564 (-) | True | CI01000029_01109371_01118517 |
| CI01000029_01123207_01149937.mRNA | mRNA | upstream | 41653 | 1122933 ~ 1150937 (-) | True | CI01000029_01123207_01149937 |
| CI01000029_01186343_01189865.mRNA | mRNA | upstream | 104407 | 1185687 ~ 1190647 (-) | False | CI01000029_01186343_01189865 |
| CI01000029_01198414_01198698.mRNA | mRNA | upstream | 117065 | 1198345 ~ 1199494 (-) | True | CI01000029_01198414_01198698 |
| CI01000029_01245770_01245984.mRNA | mRNA | upstream | 164238 | 1245518 ~ 1245984 (-) | True | CI01000029_01245770_01245984 |
| TU173481 | other | upstream | 210969 | 1292249 ~ 1294123 (-) | True | CI01000029_01293143_01293964 |
| TU173923 | other | upstream | 1510886 | 2592459 ~ 2592802 (-) | True | G153138 |
| TU174756 | other | upstream | 2167497 | 3248777 ~ 3286554 (-) | True | G153891 |
| TU174823 | other | upstream | 2624943 | 3706223 ~ 3707252 (-) | True | CI01000029_03698769_03707177 |
| TU175091 | other | upstream | 3379063 | 4472400 ~ 4477212 (-) | True | G154201 |
