RNA id: TU173758


Basic Information

Item Value
RNA id TU173758
length 540
lncRNA type intronic
GC content 0.31
exon number 2
gene id G152989
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 1619702 ~ 1620294 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAGCTATAGCACAGATGAATACAATAGAATAAACATACAAAATAAATAAACAGTGCTTTTCCGGTTTTTCAGGTTGACCTTACAGTAGTTTTCTGGTACAGAAATTGAATAAAGTAATCAAATGTAAAAACACTGCATAGTCTTCACTGTATAAATTAAATATAGAATAATCGATTAGTTGGCAGATTATTTCTTCGATTAATCTGATAAAAAGGCCCAATTTTCTTTATTTTATTGACAAAACACATTATTTCACATCCTGCCCAATGATATCCTTCAAATAAACGTGCCAACTGCTATGAAAACATCTATAGTGAATATATCTATGCTATGTGCAAAAGAGCTATAAAGAAAAAGGACAGTTTAAATCCCTACATTAAAAATGAAGATAATAATAAAGATAAGAGAGTCCTGCAGGGACAGTAACCTATGTTACCGTCTTTTCTTTATCCTGGAAACGTCTTACATTTATATTCAATTAGGCCTAAGTTACACGCTGTTATCCCTTTACAGATACCACTCTCATAAAATACTTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173734 lncRNA downstream 92098 1526723 ~ 1527604 (-) True G152965
TU173733 lncRNA downstream 94676 1524813 ~ 1525026 (-) True G152964
TU173708 lncRNA downstream 154230 1465167 ~ 1465472 (-) True G152939
TU173704 lncRNA downstream 162506 1456965 ~ 1457196 (-) True G152935
TU173702 lncRNA downstream 164683 1454792 ~ 1455019 (-) True G152933
TU173531 lncRNA upstream 38695 1658989 ~ 1659505 (-) True G152775
TU173498 lncRNA upstream 216802 1837096 ~ 1851027 (-) True G152742
TU173504 lncRNA upstream 232787 1853081 ~ 1853608 (-) True G152748
TU173864 lncRNA upstream 314647 1934941 ~ 1937564 (-) False G153085
TU173865 lncRNA upstream 315878 1936172 ~ 1937564 (-) True G153085
CI01000029_01600901_01604213.mRNA mRNA downstream 14497 1600732 ~ 1605205 (-) True CI01000029_01600901_01604213
CI01000029_01576996_01590356.mRNA mRNA downstream 27575 1576339 ~ 1592127 (-) True CI01000029_01576996_01590356
CI01000029_01353955_01354599.mRNA mRNA downstream 265103 1353828 ~ 1354599 (-) False CI01000029_01353955_01354599
CI01000029_01294841_01297423.mRNA mRNA downstream 322279 1294724 ~ 1297423 (-) True CI01000029_01294841_01297423
CI01000029_01293143_01293964.mRNA mRNA downstream 325656 1292544 ~ 1294046 (-) False CI01000029_01293143_01293964
CI01000029_01645824_01650080.mRNA mRNA upstream 25421 1645715 ~ 1650080 (-) True CI01000029_01645824_01650080
CI01000029_01688033_01695159.mRNA mRNA upstream 67563 1687857 ~ 1695233 (-) True CI01000029_01688033_01695159
CI01000029_01750119_01750442.mRNA mRNA upstream 129564 1749858 ~ 1750701 (-) True CI01000029_01750119_01750442
CI01000029_01758347_01773935.mRNA mRNA upstream 138017 1758311 ~ 1773935 (-) True CI01000029_01758347_01773935
CI01000029_01783528_01785599.mRNA mRNA upstream 163169 1783463 ~ 1785599 (-) True CI01000029_01783528_01785599
TU173481 other downstream 325579 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 971872 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 1628483 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 2085929 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 2840049 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 3365814 4986108 ~ 4987425 (-) False G154415

Expression Profile