RNA id: TU173885


Basic Information

Item Value
RNA id TU173885
length 248
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G153105
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2095835 ~ 2096082 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTCCATTAACCTCATGTTTAGAAAAAAGTCTCTCTAGATGTGGCTGTGGGGCAAAAACCAGACCCTGTCAGCTATACTTCACATCTTCACTGGCCATTAGCACATGCTGCGGCCAAAACTGTTGGCAGAGACCACACACACGCACTCACACTGACAGAGAGCGGGGATAAAGAGGCAGGAAAGCAGTAAGAAGTGTGGAGCGCCACACAAAATGAAAAGGGATGTGTCTCTGTGGTCTTCCAAACCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173882 lncRNA downstream 15551 2080072 ~ 2080284 (-) True G153102
TU173864 lncRNA downstream 158271 1934941 ~ 1937564 (-) False G153085
TU173865 lncRNA downstream 158271 1936172 ~ 1937564 (-) True G153085
TU173504 lncRNA downstream 242227 1853081 ~ 1853608 (-) True G152748
TU173498 lncRNA downstream 244808 1837096 ~ 1851027 (-) True G152742
TU173518 lncRNA upstream 17342 2113424 ~ 2114309 (-) True G152762
TU173919 lncRNA upstream 129635 2225717 ~ 2227563 (-) True G153134
TU173946 lncRNA upstream 347581 2443663 ~ 2444082 (-) True G153161
TU173947 lncRNA upstream 349069 2445151 ~ 2445890 (-) True G153162
TU173948 lncRNA upstream 351048 2447130 ~ 2447590 (-) True G153163
CI01000029_02054840_02058175.mRNA mRNA downstream 37449 2054493 ~ 2058386 (-) True CI01000029_02054840_02058175
CI01000029_02029449_02036156.mRNA mRNA downstream 59679 2029426 ~ 2036156 (-) True CI01000029_02029449_02036156
CI01000029_01943164_01970772.mRNA mRNA downstream 124830 1942645 ~ 1971005 (-) True CI01000029_01943164_01970772
CI01000029_01812895_01814632.mRNA mRNA downstream 281203 1812805 ~ 1814632 (-) True CI01000029_01812895_01814632
CI01000029_01788875_01811689.mRNA mRNA downstream 284146 1788789 ~ 1811689 (-) True CI01000029_01788875_01811689
CI01000029_02099152_02101364.mRNA mRNA upstream 2930 2099012 ~ 2102007 (-) True CI01000029_02099152_02101364
CI01000029_02107558_02110456.mRNA mRNA upstream 11248 2107330 ~ 2111349 (-) True CI01000029_02107558_02110456
CI01000029_02114824_02116942.mRNA mRNA upstream 18510 2114592 ~ 2119568 (-) True CI01000029_02114824_02116942
CI01000029_02125408_02143865.mRNA mRNA upstream 29240 2125322 ~ 2143865 (-) True CI01000029_02125408_02143865
CI01000029_02145528_02148347.mRNA mRNA upstream 48368 2144450 ~ 2149108 (-) True CI01000029_02145528_02148347
TU173481 other downstream 801712 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 496084 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 1152695 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 1610141 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 2364261 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 2890026 4986108 ~ 4987425 (-) False G154415

Expression Profile