RNA id: TU174630


Basic Information

Item Value
RNA id TU174630
length 215
lncRNA type antisense_over
GC content 0.23
exon number 2
gene id G153775
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4693735 ~ 4709748 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAACATTGTTCCAGGTCTGAACATTTCTTTTTGCTTTTTTCTTCTTCTTGTTGCTTTGAATAATGGCAGATTCTTGCAGCTCAATGGACTACTACTGTTTCTTTCCAGTTCACTATCCAGGGACATGTTACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174537 lncRNA upstream 216520 4460203 ~ 4461094 (+) True G153700
TU174543 lncRNA upstream 265550 4427708 ~ 4428185 (+) True G153703
TU174509 lncRNA upstream 331697 4330530 ~ 4362038 (+) True G153672
TU174500 lncRNA upstream 398757 4294761 ~ 4294978 (+) True G153663
TU174497 lncRNA upstream 407367 4286112 ~ 4286368 (+) True G153660
TU175249 lncRNA downstream 222231 4931979 ~ 4932238 (+) True G154352
TU175250 lncRNA downstream 230719 4940467 ~ 4940703 (+) True G154353
TU175255 lncRNA downstream 239556 4949304 ~ 4949565 (+) True G154358
TU175257 lncRNA downstream 243955 4953703 ~ 4953910 (+) True G154360
TU175258 lncRNA downstream 249747 4959495 ~ 4959708 (+) True G154361
CI01000029_04590418_04605290.mRNA mRNA upstream 88041 4590284 ~ 4605694 (+) True CI01000029_04590418_04605290
CI01000029_04521600_04521771.mRNA mRNA upstream 170984 4521600 ~ 4522751 (+) True CI01000029_04521600_04521771
CI01000029_04478628_04483582.mRNA mRNA upstream 210134 4476420 ~ 4483601 (+) False CI01000029_04478628_04483582
CI01000029_04409794_04419021.mRNA mRNA upstream 274714 4409794 ~ 4419021 (+) True CI01000029_04409794_04419021
CI01000029_04389599_04399047.mRNA mRNA upstream 294670 4389599 ~ 4399065 (+) True CI01000029_04389599_04399047
CI01000029_04981453_04995255.mRNA mRNA downstream 271397 4981145 ~ 4995662 (+) True CI01000029_04981453_04995255
CI01000029_05041887_05044363.mRNA mRNA downstream 331249 5040997 ~ 5045063 (+) True CI01000029_05041887_05044363
CI01000029_05104260_05107686.mRNA mRNA downstream 393471 5103219 ~ 5107804 (+) True CI01000029_05104260_05107686
CI01000029_05232703_05233677.mRNA mRNA downstream 520444 5230192 ~ 5234070 (+) True CI01000029_05232703_05233677
CI01000029_05267765_05268790.mRNA mRNA downstream 557942 5267690 ~ 5268884 (+) True CI01000029_05267765_05268790
TU174291 other upstream 1131731 3545125 ~ 3562004 (+) True G153475
TU173161 other upstream 1930796 2761594 ~ 2762939 (+) True G152451
TU172657 other upstream 3165836 1526786 ~ 1527899 (+) True CI01000029_01526863_01527414
TU172072 other upstream 4322011 366580 ~ 371724 (+) False G151495
TU174646 other downstream 23841 4733589 ~ 4740107 (+) True G153790
TU175511 other downstream 561272 5271020 ~ 5271535 (+) True G154587
TU175455 other downstream 747493 5457241 ~ 5457472 (+) True G154531
TU176089 other downstream 1572937 6282685 ~ 6288398 (+) True G155079
TU176095 other downstream 1721787 6431535 ~ 6490294 (+) False G155083

Expression Profile