RNA id: TU175258


Basic Information

Item Value
RNA id TU175258
length 214
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G154361
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4959495 ~ 4959708 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGATCAGCTACATTGCACCTGTTGTCTATGCTGAGACATCATCTTTATGGCTGATTAGAGTGGTGATTACTTCCTGATAGGCTGGACCGTTGGGTTTGGTGGGGCTGGTTCTACTGCAGCTCATTAGAAGAAGGCCAGTGAAGTCTTACTAAGCAAAACTTGCAGAAGGTTTAGCCTGCAAAGTGCAGCCAGCAGCAAAAACACAAGAGAGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175257 lncRNA upstream 5585 4953703 ~ 4953910 (+) True G154360
TU175255 lncRNA upstream 9930 4949304 ~ 4949565 (+) True G154358
TU175250 lncRNA upstream 18792 4940467 ~ 4940703 (+) True G154353
TU175249 lncRNA upstream 27257 4931979 ~ 4932238 (+) True G154352
TU174558 lncRNA upstream 44586 4548348 ~ 4914909 (+) True G153707
TU175263 lncRNA downstream 3640 4963348 ~ 4963568 (+) True G154366
TU175265 lncRNA downstream 13470 4973178 ~ 4973526 (+) True G154368
TU175268 lncRNA downstream 17020 4976728 ~ 4976986 (+) True G154371
TU175269 lncRNA downstream 17523 4977231 ~ 4977523 (+) True G154372
TU175238 lncRNA downstream 27054 4986762 ~ 4987398 (+) True G154341
CI01000029_04590418_04605290.mRNA mRNA upstream 353801 4590284 ~ 4605694 (+) True CI01000029_04590418_04605290
CI01000029_04521600_04521771.mRNA mRNA upstream 436744 4521600 ~ 4522751 (+) True CI01000029_04521600_04521771
CI01000029_04478628_04483582.mRNA mRNA upstream 475894 4476420 ~ 4483601 (+) False CI01000029_04478628_04483582
CI01000029_04409794_04419021.mRNA mRNA upstream 540474 4409794 ~ 4419021 (+) True CI01000029_04409794_04419021
CI01000029_04389599_04399047.mRNA mRNA upstream 560430 4389599 ~ 4399065 (+) True CI01000029_04389599_04399047
CI01000029_04981453_04995255.mRNA mRNA downstream 21437 4981145 ~ 4995662 (+) True CI01000029_04981453_04995255
CI01000029_05041887_05044363.mRNA mRNA downstream 81289 5040997 ~ 5045063 (+) True CI01000029_05041887_05044363
CI01000029_05104260_05107686.mRNA mRNA downstream 143511 5103219 ~ 5107804 (+) True CI01000029_05104260_05107686
CI01000029_05232703_05233677.mRNA mRNA downstream 270484 5230192 ~ 5234070 (+) True CI01000029_05232703_05233677
CI01000029_05267765_05268790.mRNA mRNA downstream 307982 5267690 ~ 5268884 (+) True CI01000029_05267765_05268790
TU174646 other upstream 219388 4733589 ~ 4740107 (+) True G153790
TU174291 other upstream 1397491 3545125 ~ 3562004 (+) True G153475
TU173161 other upstream 2196556 2761594 ~ 2762939 (+) True G152451
TU172657 other upstream 3431596 1526786 ~ 1527899 (+) True CI01000029_01526863_01527414
TU172075 other upstream 4587771 366580 ~ 371724 (+) True G151495
TU175511 other downstream 311312 5271020 ~ 5271535 (+) True G154587
TU175455 other downstream 497533 5457241 ~ 5457472 (+) True G154531
TU176089 other downstream 1322977 6282685 ~ 6288398 (+) True G155079
TU176095 other downstream 1471827 6431535 ~ 6490294 (+) False G155083
TU176099 other downstream 1471827 6431535 ~ 6490294 (+) True G155083

Expression Profile