RNA id: TU177528


Basic Information

Item Value
RNA id TU177528
length 260
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G156357
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6575727 ~ 6575986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAAGGGAGGGCATCATGTTCTGCTTCAGAATGTCACAGTACATGTTGGAATCCATGTTTCCCTCAATGAAGTGCAGTTCCCCAGTCCCAGCAGCACTCATGCAGCCCCAGACTATGATGCTACCACCACCATGCTTGACTGTAGGCAAGACACAATTTTCTTGGTACTCCTCACCAGGGCATTTCCACACATGCTGGACACCATCTGAGCCAAACAAGTTTATCTTAGTCTCATCAGACCACAGGACATGGTTCCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177516 lncRNA downstream 36406 6538523 ~ 6539321 (-) True G156345
TU177449 lncRNA downstream 190718 6384761 ~ 6385009 (-) True G156285
TU177427 lncRNA downstream 305607 6269919 ~ 6270120 (-) True G156266
TU177407 lncRNA downstream 498095 6076162 ~ 6077632 (-) True G156249
TU177376 lncRNA downstream 605512 5969997 ~ 5970215 (-) True G156222
TU177529 lncRNA upstream 1915 6577901 ~ 6578184 (-) True G156358
TU177530 lncRNA upstream 2275 6578261 ~ 6578493 (-) True G156359
TU177533 lncRNA upstream 20503 6596489 ~ 6596700 (-) True G156362
TU177486 lncRNA upstream 106705 6682691 ~ 6687634 (-) False G156322
TU177487 lncRNA upstream 106705 6682691 ~ 6687634 (-) False G156322
CI01000029_06486658_06492567.mRNA mRNA downstream 83160 6486470 ~ 6492567 (-) True CI01000029_06486658_06492567
CI01000029_06449255_06451786.mRNA mRNA downstream 123941 6449112 ~ 6451786 (-) True CI01000029_06449255_06451786
CI01000029_06431763_06439215.mRNA mRNA downstream 136512 6431720 ~ 6439215 (-) True CI01000029_06431763_06439215
CI01000029_06410464_06420256.mRNA mRNA downstream 155471 6410022 ~ 6420256 (-) True CI01000029_06410464_06420256
CI01000029_06406402_06408397.mRNA mRNA downstream 167330 6406069 ~ 6408397 (-) True CI01000029_06406402_06408397
CI01000029_06606850_06665941.mRNA mRNA upstream 30864 6606850 ~ 6666150 (-) True CI01000029_06606850_06665941
CI01000029_06666877_06679215.mRNA mRNA upstream 90844 6666830 ~ 6679215 (-) True CI01000029_06666877_06679215
CI01000029_06689615_06698873.mRNA mRNA upstream 113551 6689537 ~ 6698873 (-) True CI01000029_06689615_06698873
CI01000029_06719634_06722376.mRNA mRNA upstream 143541 6719527 ~ 6723172 (-) True CI01000029_06719634_06722376
CI01000029_06739098_06769987.mRNA mRNA upstream 162728 6738714 ~ 6769987 (-) False CI01000029_06739098_06769987
TU175317 other downstream 1588302 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 1588302 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 2098515 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 2868475 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 3289173 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 594381 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 790341 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 790341 7366327 ~ 7369547 (-) False G156495

Expression Profile