RNA id: TU177529


Basic Information

Item Value
RNA id TU177529
length 284
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G156358
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6577901 ~ 6578184 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTCGGGGGCGGGGTTTATGTAAATTTTAGGGTTAGTGATGTCACTAACCCAGGAAGAAGCTCGTTGTAGTCCCTACCAGCCGTTTGTTGTAGTCCTTAAACAGAGAATTCTTTAAAAGAAAATATCTCCCTTTGCATTGAACTTTGAGCGTCGTAACTTTGCAGATGTTGTTTTTGCTCAAACAGCAACATTACACACTAACTAAAGTTAAAAAAGTGAAATCATAATCAACCACCCCTTTAAGTCCAAGTTAAGTCTCAGATCCCTTTTGGTAAAAGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177528 lncRNA downstream 1915 6575727 ~ 6575986 (-) True G156357
TU177516 lncRNA downstream 38580 6538523 ~ 6539321 (-) True G156345
TU177449 lncRNA downstream 192892 6384761 ~ 6385009 (-) True G156285
TU177427 lncRNA downstream 307781 6269919 ~ 6270120 (-) True G156266
TU177407 lncRNA downstream 500269 6076162 ~ 6077632 (-) True G156249
TU177530 lncRNA upstream 77 6578261 ~ 6578493 (-) True G156359
TU177533 lncRNA upstream 18305 6596489 ~ 6596700 (-) True G156362
TU177486 lncRNA upstream 104507 6682691 ~ 6687634 (-) False G156322
TU177487 lncRNA upstream 104507 6682691 ~ 6687634 (-) False G156322
TU177488 lncRNA upstream 104507 6682691 ~ 6687634 (-) True G156322
CI01000029_06486658_06492567.mRNA mRNA downstream 85334 6486470 ~ 6492567 (-) True CI01000029_06486658_06492567
CI01000029_06449255_06451786.mRNA mRNA downstream 126115 6449112 ~ 6451786 (-) True CI01000029_06449255_06451786
CI01000029_06431763_06439215.mRNA mRNA downstream 138686 6431720 ~ 6439215 (-) True CI01000029_06431763_06439215
CI01000029_06410464_06420256.mRNA mRNA downstream 157645 6410022 ~ 6420256 (-) True CI01000029_06410464_06420256
CI01000029_06406402_06408397.mRNA mRNA downstream 169504 6406069 ~ 6408397 (-) True CI01000029_06406402_06408397
CI01000029_06606850_06665941.mRNA mRNA upstream 28666 6606850 ~ 6666150 (-) True CI01000029_06606850_06665941
CI01000029_06666877_06679215.mRNA mRNA upstream 88646 6666830 ~ 6679215 (-) True CI01000029_06666877_06679215
CI01000029_06689615_06698873.mRNA mRNA upstream 111353 6689537 ~ 6698873 (-) True CI01000029_06689615_06698873
CI01000029_06719634_06722376.mRNA mRNA upstream 141343 6719527 ~ 6723172 (-) True CI01000029_06719634_06722376
CI01000029_06739098_06769987.mRNA mRNA upstream 160530 6738714 ~ 6769987 (-) False CI01000029_06739098_06769987
TU175317 other downstream 1590476 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 1590476 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 2100689 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 2870649 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 3291347 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 592183 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 788143 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 788143 7366327 ~ 7369547 (-) False G156495

Expression Profile