Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU177488 |
| length | 723 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 4 |
| gene id | G156322 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 6682691 ~ 6687634 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU177533 | lncRNA | downstream | 85991 | 6596489 ~ 6596700 (-) | True | G156362 |
| TU177530 | lncRNA | downstream | 104198 | 6578261 ~ 6578493 (-) | True | G156359 |
| TU177529 | lncRNA | downstream | 104507 | 6577901 ~ 6578184 (-) | True | G156358 |
| TU177528 | lncRNA | downstream | 106705 | 6575727 ~ 6575986 (-) | True | G156357 |
| TU177516 | lncRNA | downstream | 143370 | 6538523 ~ 6539321 (-) | True | G156345 |
| TU177503 | lncRNA | upstream | 1118 | 6688752 ~ 6689050 (-) | True | G156332 |
| TU177497 | lncRNA | upstream | 50899 | 6738533 ~ 6741055 (-) | True | CI01000029_06739098_06769987 |
| TU177551 | lncRNA | upstream | 73430 | 6761064 ~ 6761314 (-) | True | G156380 |
| TU177492 | lncRNA | upstream | 98779 | 6786413 ~ 6833696 (-) | False | G156323 |
| TU177491 | lncRNA | upstream | 144220 | 6833628 ~ 6833696 (-) | True | G156323 |
| CI01000029_06666877_06679215.mRNA | mRNA | downstream | 3476 | 6666830 ~ 6679215 (-) | True | CI01000029_06666877_06679215 |
| CI01000029_06606850_06665941.mRNA | mRNA | downstream | 16541 | 6606850 ~ 6666150 (-) | True | CI01000029_06606850_06665941 |
| CI01000029_06486658_06492567.mRNA | mRNA | downstream | 190124 | 6486470 ~ 6492567 (-) | True | CI01000029_06486658_06492567 |
| CI01000029_06449255_06451786.mRNA | mRNA | downstream | 230905 | 6449112 ~ 6451786 (-) | True | CI01000029_06449255_06451786 |
| CI01000029_06431763_06439215.mRNA | mRNA | downstream | 243476 | 6431720 ~ 6439215 (-) | True | CI01000029_06431763_06439215 |
| CI01000029_06689615_06698873.mRNA | mRNA | upstream | 1903 | 6689537 ~ 6698873 (-) | True | CI01000029_06689615_06698873 |
| CI01000029_06719634_06722376.mRNA | mRNA | upstream | 31893 | 6719527 ~ 6723172 (-) | True | CI01000029_06719634_06722376 |
| CI01000029_06739098_06769987.mRNA | mRNA | upstream | 51080 | 6738714 ~ 6769987 (-) | False | CI01000029_06739098_06769987 |
| CI01000029_06798103_06806327.mRNA | mRNA | upstream | 110406 | 6798040 ~ 6806846 (-) | True | CI01000029_06798103_06806327 |
| CI01000029_06832914_06833074.mRNA | mRNA | upstream | 145075 | 6832709 ~ 6833074 (-) | False | CI01000029_06832914_06833074 |
| TU175317 | other | downstream | 1695266 | 4986108 ~ 4987425 (-) | False | G154415 |
| TU175314 | other | downstream | 1695266 | 4986185 ~ 4987425 (-) | True | G154415 |
| TU175091 | other | downstream | 2205479 | 4472400 ~ 4477212 (-) | True | G154201 |
| TU174823 | other | downstream | 2975439 | 3706223 ~ 3707252 (-) | True | CI01000029_03698769_03707177 |
| TU174756 | other | downstream | 3396137 | 3248777 ~ 3286554 (-) | True | G153891 |
| TU177741 | other | upstream | 482733 | 7170367 ~ 7170951 (-) | False | G156542 |
| TU177684 | other | upstream | 678693 | 7366327 ~ 7369547 (-) | False | G156495 |
| TU177685 | other | upstream | 678693 | 7366327 ~ 7369547 (-) | False | G156495 |
