RNA id: TU177688


Basic Information

Item Value
RNA id TU177688
length 2663
lncRNA type antisense_over
GC content 0.45
exon number 8
gene id G156495
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7365007 ~ 7371921 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTTTAATAATGATTATTCTTTATTTATACAGTGAAGGTTATTTGCAATGTTTTACATTTGATTCAATTCCTGCACCTGAAAAGCAGTTCATTTTGTGTATTTGTGCTGTTGCTTGATTATTATTCTCTTTATTTTTATTTGACAGTAGTCATTTTTTCCCCCTGAAAATAGCACATGCCGAAACCATGACCCTAAAACAGTGATAAAAACTAAACATGAGTAATTTGAACGACTTCAATTTTTTTTTGAAGTATTCAAATTTGTTTGAAATGAATGAAAAAGAAAACAGCAAAATTCAGGTTTCACCTTGTGTTTTAATTTCTGAAAACCAATACAACACAAGCCTGTACTCAGGCAAAGGTCTTTCCCCTTCCATGCAGAATGAAATCATGCTTGATTCAATCCAGCACAGCCAGCAGACTCAGTATCAGTGAAACACAGTGCTTATTGTGCTCAGACAATACTGCAGCAACCCATTGATCCATGAACATATGTAAAAAACAAAAGTACATAATGGCTCAAAACAGAGCAAAAGTGGACAGTACGCTTTAGTTACACATTATGATACTTTTAGGAATCATTACTGAGATCAGGTAAACCTTCTACAGGTCAGAGAGAACGATAAGATGTTATGGAATGATTACGGAAAATTGACTGGGGAATTAGAGACGGATGGATTTAATCGACTTCCTCCATGCGAGAGGCGTCATCGTCTCCTTCCAGAGGTGGAATCTCTTCAGGAGCGGGAGCGGAGCTCGGCTCTTCAACAGGCACGTCTTCATCTTCATTACCCAATCCCAGCTTGATCATTCTGTAGATACGGTTTGAGTGTGTCTGAGGATCGTCCAATGAGAATCCAGAGGAAAGCAGCGCAGTCTCGAACAGGAGGATGACCAGATCCTTCACGGCTTTGTCGTTTTTATCTGCATCAGCCTTCTGCCTCAGAGTCTCCATGATGGGATGATCGGGGTTGATCTCCAGGTGTTTCTTGGCCATCATGTAGCCCATGGTGGAGTTGTCCCGCAGGGCCTGAGCCTTCATGATCCTCTCCATGTTGGCCGTCCATCCGTAAGTGCTGGTCACGATACAGCAGGGGGAAGAAACCAGCCTGTTTGATACGGTGACCTTCTCTACTTTCTTGTCCAGAATCTCTTTCATGAGCTTGCAGAGGTTCTCAAACTTGGCCTTGTCTTCCTCCATCTTTTTCTTCTCGTCTTCATCCTCAGGCAGCTCCAGTCCCTCTTTGGTGACGGACACCAGAGACTTGCCATCAAAGTCCTTCAGCTGCTGGACGCAGTACTCGTCGATGGGCTCGGTCATGTACAGCACCTCGAAACCTCTCTTGCACACACGCTCCACAAAAGCGGAGTGGGCGACCTGGTCTTTGCTCACCAGTGATGTAGTAGATAGATTTCTGGGTTTCCTTCATACGGCTGACGTATTCTGTGAGGGAGGTCATCTCGTCGCCGGACTGTGAGCTCTGATAACGCAGCAGTTCTGACAGCTTCTTGCGATTCTGAGAGTCTTCGTGGATGCCCAGTTTAAGATTCTTGGAGAACGCGTCGTAGAACTTCTTGTAGTTTTCCTTGTCCTCGGCCAGCTCAGCAAACAGCTCCAGGCACTTCTTGACGATGTTCTTGCGGATGACCTTGAGAATCTTGCTCTGTTGCAGCCAGGTGGTCTTCCCAATCATTGGTCAGGCTCTTGTAAAACTCTCCGTACTCCTCGTTGGAGATGTCGTCAGGGTTGCGGGTCCAGATGGGTTTGGTTTTGTTCAGCTCCTCCTGGTCGATGTACTTCTCCTTGATCTTCTTCTTTTTCTTCTTGTCCTTGTCTTTGGAGTCCTCTTCATCATCTGAGCCGACATCTTCTATCTTGGGTTTGTCTTCACCTTCCTCCTTTTCCTCTTTCTCAGCCTTCTCCTCTTTCTCCTCCTCTGCCTCATCGTCACTGATCTCCTTGTCGCGTTCCTTCTCCACCTTTAGAGTGATTGGGTATCCGATGAACTGAGAGTGTTTCTTGACCACTTCCTTCACCCTCTTCTCCTCGACGTACTCGGTCTGATCTTCTTTCAGGTGAAGAATGACTCTGGTTCCACGGCCAATGGGCTCACCTGGAGATTGACAGGTGTGTGAACATCAACATCACCCTTAATACAGCATGTGTGTCTTCAAAGATAAGCTGATAACATACCATGGTCAACCTTGACTGTGAAAGAGCCGCCAGCGGATGACTCCCAGGCGTACTGCTCATCATCGTTGTTTTTAGTGATGACCGTGACCTTTTCAGCCACCAGGTAGGCAGAATAGAATCCTACACCAAACTGCCCAATCATGGAGATATCGGCACCAGCTGCAGAGCCTCCATGAAGGCCTTTGTCCCGGACTTTGCGATGGTACCCAGGTTATTGATGAGATCGGCTTTGGTCATTCCAATACCGGTGTCAATAATGGTAAGAGTGCGTTCATGAACGTTGGGGATGATGTCGATCTTCAGGTCCTTGCCACTGTCCAGTTTGGTGGGATCTGTCAAACTTTCATACCTGATTTTGTCAAGAGCCTGTTGAGTGGAGACAACAAAATTGGTTAATAGCTGAAACTACATTATATCAAAATGTAAAAGACCACCACAACTTTAACGATAACGAAACTGAGAAATTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177798 lncRNA downstream 35721 7330245 ~ 7330606 (-) True G156594
TU177792 lncRNA downstream 48782 7316066 ~ 7317545 (-) True G156588
TU177791 lncRNA downstream 56307 7309798 ~ 7310020 (-) True G156587
TU177785 lncRNA downstream 74353 7287533 ~ 7291974 (-) True G156584
TU177775 lncRNA downstream 103046 7260720 ~ 7263281 (-) True G156574
TU177811 lncRNA upstream 75632 7447553 ~ 7447796 (-) True G156607
TU177704 lncRNA upstream 93950 7465871 ~ 7468189 (-) True CI01000029_07468989_07470230
TU177819 lncRNA upstream 115094 7487015 ~ 7487242 (-) True G156615
TU177705 lncRNA upstream 128414 7500335 ~ 7502988 (-) True G156507
TU177702 lncRNA upstream 131987 7503908 ~ 7514798 (-) True G156504
CI01000029_07346183_07362585.mRNA mRNA downstream 3742 7346065 ~ 7362585 (-) True CI01000029_07346183_07362585
CI01000029_07332828_07336542.mRNA mRNA downstream 29785 7332295 ~ 7336542 (-) True CI01000029_07332828_07336542
CI01000029_06921800_06922750.mRNA mRNA downstream 443212 6921281 ~ 6923115 (-) True CI01000029_06921800_06922750
CI01000029_06832914_06833074.mRNA mRNA downstream 533253 6832709 ~ 6833074 (-) False CI01000029_06832914_06833074
CI01000029_06798103_06806327.mRNA mRNA downstream 559481 6798040 ~ 6806846 (-) True CI01000029_06798103_06806327
CI01000029_07388885_07402311.mRNA mRNA upstream 16323 7388244 ~ 7402678 (-) True CI01000029_07388885_07402311
CI01000029_07405933_07416452.mRNA mRNA upstream 33622 7405543 ~ 7416952 (-) True CI01000029_07405933_07416452
CI01000029_07419676_07421496.mRNA mRNA upstream 47714 7419635 ~ 7422668 (-) True CI01000029_07419676_07421496
CI01000029_07435007_07443830.mRNA mRNA upstream 63019 7434940 ~ 7443830 (-) True CI01000029_07435007_07443830
CI01000029_07455468_07464461.mRNA mRNA upstream 83439 7455360 ~ 7464465 (-) True CI01000029_07455468_07464461
TU177741 other downstream 195376 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 2378902 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 2378902 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 2889115 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 3659075 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177

Expression Profile