RNA id: TU178287


Basic Information

Item Value
RNA id TU178287
length 356
lncRNA type intronic
GC content 0.31
exon number 1
gene id G157026
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9203351 ~ 9203706 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTTTCACATTTTATTTTACACAACGTAACATGTTTGTATGCAGTGTTTGTATTATTCCATAAAACAAAGAAATATACAAGTCATAGTATTATTTTACTATATGCAGGAAACAGTATTTAATTTGTGCTTAAAAAACATCGGCTTGTACATTGTCCTTTCGATCCACGTCTGATTTTAAAGTCTGATACTCGACAGTCTGAGACTATACACTGCAAACACGATGTTCTTCCTCAGTTTTCTCTCTTGATTTCCAATATCTAAACATTCTTAAATCAAGATACATTTACTGGAGAAGTAAAATGACTGAAGATATCAAGTCTTGCTTTCTGAAAAATGTGTCAAAATGAAGTAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178270 lncRNA downstream 47689 9152396 ~ 9155662 (-) True G157014
TU178266 lncRNA downstream 80916 9122211 ~ 9122435 (-) True G157013
TU178263 lncRNA downstream 95592 9107207 ~ 9107759 (-) True G157010
TU178260 lncRNA downstream 98550 9104459 ~ 9104801 (-) True G157007
TU178086 lncRNA downstream 101545 9096397 ~ 9101806 (-) True G156842
TU178288 lncRNA upstream 38123 9241829 ~ 9242077 (-) True G157027
TU178289 lncRNA upstream 40621 9244327 ~ 9244536 (-) True G157028
TU178307 lncRNA upstream 103826 9307532 ~ 9308634 (-) True G157043
TU178310 lncRNA upstream 119207 9322913 ~ 9325470 (-) True G157046
CI01000029_09173596_09181048.mRNA mRNA downstream 22210 9173205 ~ 9181141 (-) True CI01000029_09173596_09181048
CI01000029_09114660_09118056.mRNA mRNA downstream 85023 9114554 ~ 9118328 (-) True CI01000029_09114660_09118056
CI01000029_09067123_09072979.mRNA mRNA downstream 130372 9066765 ~ 9072979 (-) True CI01000029_09067123_09072979
CI01000029_09062820_09065407.mRNA mRNA downstream 137944 9062776 ~ 9065407 (-) True CI01000029_09062820_09065407
CI01000029_08974137_08982053.mRNA mRNA downstream 221244 8972759 ~ 8982107 (-) True CI01000029_08974137_08982053
CI01000029_09212269_09216732.mRNA mRNA upstream 7121 9210827 ~ 9216732 (-) True CI01000029_09212269_09216732
CI01000029_09218366_09222084.mRNA mRNA upstream 14108 9217814 ~ 9222084 (-) True CI01000029_09218366_09222084
CI01000029_09224569_09226329.mRNA mRNA upstream 20584 9224290 ~ 9226329 (-) True CI01000029_09224569_09226329
CI01000029_09241423_09246886.mRNA mRNA upstream 37588 9241294 ~ 9246886 (-) True CI01000029_09241423_09246886
CI01000029_09256349_09260500.mRNA mRNA upstream 52248 9255954 ~ 9262369 (-) True CI01000029_09256349_09260500
TU177684 other downstream 1833804 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1833804 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 2032400 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 4215926 4986108 ~ 4987425 (-) False G154415

Expression Profile