RNA id: TU178310


Basic Information

Item Value
RNA id TU178310
length 586
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G157046
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9322913 ~ 9325470 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAAAATAAACCAGTGTGGAAGGACAAGAGCTGCCGACAGTTGAGAGAGAAACAGGAAGTGCGAGTCTGGAACAGGAAGTGATGCGTGCGGTACCTTCATGGGGGCGAGCTGTATGGGTGTGATGTAGGACGGGTCCACCATGGGTTTGGGCCGGTTGGCCGTGTCGGCCAGCAGACTCTGCCATTGCTGCGGCAGGCCGGTGAACTTCTGCTCGTGCGGGTCGAAGCCCGTGTGGACGCGGTGCTCGAAGTTGGAAGGGGCCGAAATCTCCAGCCTCTTCTTCTTCTTTCCAAACATGTTGGAAAAGCTGGAAAACGTGATTGGTCGAGTCAGAAGTTGAGATGTCTGGCCGCACAAACAAACAGTTGTGAAAGCGTGTTTGACTCTTCAGTGACTCTGAACATGAAACCGACACTGACTGAACCTCTGAGCGTCACACGCGTCGCAGCAGCTGTTCTCGAGCAGCTCTAACTCATGTGTCTTCAGCTGATGTGTCCATCCGAACAATGAGCCAGTGTCTGCAGTGACAGTCGGCACCGGTCGCCCCGCGGCCCGAGTGACCGTCAGCAGCGCTGTCTGTCCTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178307 lncRNA downstream 14279 9307532 ~ 9308634 (-) True G157043
TU178289 lncRNA downstream 78377 9244327 ~ 9244536 (-) True G157028
TU178288 lncRNA downstream 80836 9241829 ~ 9242077 (-) True G157027
TU178287 lncRNA downstream 119207 9203351 ~ 9203706 (-) True G157026
TU178270 lncRNA downstream 167251 9152396 ~ 9155662 (-) True G157014
CI01000029_09300363_09303399.mRNA mRNA downstream 19514 9300262 ~ 9303399 (-) True CI01000029_09300363_09303399
CI01000029_09266806_09267723.mRNA mRNA downstream 55177 9265396 ~ 9267736 (-) True CI01000029_09266806_09267723
CI01000029_09256349_09260500.mRNA mRNA downstream 60544 9255954 ~ 9262369 (-) True CI01000029_09256349_09260500
CI01000029_09241423_09246886.mRNA mRNA downstream 76027 9241294 ~ 9246886 (-) True CI01000029_09241423_09246886
CI01000029_09224569_09226329.mRNA mRNA downstream 96584 9224290 ~ 9226329 (-) True CI01000029_09224569_09226329
CI01000029_09362545_09363909.mRNA mRNA upstream 35996 9361466 ~ 9364306 (-) True CI01000029_09362545_09363909
CI01000029_09371783_09394715.mRNA mRNA upstream 46313 9371783 ~ 9395151 (-) True CI01000029_09371783_09394715
CI01000029_09399992_09440921.mRNA mRNA upstream 74143 9399613 ~ 9440921 (-) True CI01000029_09399992_09440921
TU177684 other downstream 1953366 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1953366 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 2151962 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 4335488 4986108 ~ 4987425 (-) False G154415

Expression Profile